; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G003050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationCmo_Chr13:3316077..3317934
RNA-Seq ExpressionCmoCh13G003050
SyntenyCmoCh13G003050
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES88230.1 DNA-directed RNA polymerase subunit beta [Medicago truncatula]6.0e-3335.71Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------
        MLTY+SDHI+ARQEVLG TIIGG IP P + PESF+LLVREL                                         W    L NG I      
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------

Query:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP
                            +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y   +PS    YI +   LD P
Subjt:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP

Query:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY
        LKELEGLVYCD              H + SKG   ++ S  N  S     ++     R RGS           Y++          F  +GF   R  + 
Subjt:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY

Query:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ---------VGRRKDFGARRMELAKHFIRTNIE
        S  A       AIREQLVD  LR+I+D  L EWKELGEEG A  +         VGRRK+F  RRMEL KHFIRTNIE
Subjt:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ---------VGRRKDFGARRMELAKHFIRTNIE

EFH63122.1 hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata]2.3e-3735.64Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWLWNGIISL------------------------------------------------
        MLTY+SDHIRARQEVLG TIIGG IP PE+ PESF+LLVREL  L   +I +                                                
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWLWNGIISL------------------------------------------------

Query:  -----------------LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKE
                         +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD PLKE
Subjt:  -----------------LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKE

Query:  LEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVINR------NSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREI
        LEGLVYCD   + +  G   YS P    N+S    +  +         F   +++W                  +Y + PLF      F  +GF I R  
Subjt:  LEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVINR------NSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREI

Query:  DYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
        + S  A       AIREQL D  LR+II+  L EWK+LGEEGP   +     + RRKDF  RRMELAKHFIRTNIE
Subjt:  DYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

KAF3449773.1 hypothetical protein FNV43_RR05851 [Rhamnella rubrinervis]4.4e-3635.48Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWL----------------------------W--------------------------
        MLTY+SDHIRARQEVLG TIIGG IP PE+ PESF+LL   L  +                            W                          
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWL----------------------------W--------------------------

Query:  ---NGII-SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYC
           NG+    +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD PLKELEGLVYC
Subjt:  ---NGII-SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYC

Query:  D----EYHEAQ-NCGCSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVG-----------PARPDRME----------RYQVSPLFQGTLY
        D      H  +  C  S  S  +S     +++  + RN Q        CH  R  S+             A+P   +           Y++         
Subjt:  D----EYHEAQ-NCGCSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVG-----------PARPDRME----------RYQVSPLFQGTLY

Query:  SFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
         F  +GF I R  + S  A       AIREQL D  LR+IID+ L EWKELGEEG    +     VGRRKDF  RRMELAKHFIRTNIE
Subjt:  SFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

XP_024439131.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112323823 [Populus trichocarpa]4.3e-3134.12Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------
        MLTY+SDHIRARQEVLG TI G  IP PE+ PESF+LLVREL                                         W    L NG I      
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------

Query:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP
                            +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD P
Subjt:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP

Query:  LKELEGLVYCD-----EYHEAQNCG---CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFV
        LK+LEGLVYCD      +H     G      Y +       +   + +     F   +++W                  +Y + PLF      F  +GF 
Subjt:  LKELEGLVYCD-----EYHEAQNCG---CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFV

Query:  IPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
          R  + S  A       AIRE L D  LR+I+DY   EWKELGEEG    +     VGRRKDF  RR+ELAKHFIRTNIE
Subjt:  IPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

XP_027186860.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113784808 [Cicer arietinum]4.6e-3335.37Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------
        MLTY+SDHI+ARQEVLG TIIGG IP P + PESF+LLVREL                                         W    L NG I      
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------

Query:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP
                            +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y   +PS    YI +   LD P
Subjt:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP

Query:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY
        LKELEGLVYCD              H + SKG   ++       S     ++     R RGS           Y++          F  +GF   R  + 
Subjt:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY

Query:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-------VGRRKDFGARRMELAKHFIRTNIE
        S  A       AIREQLVD  LR+I+D  L EWKELGEEG    +       VGRRK+F  RRMELAKHFIRTNIE
Subjt:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-------VGRRKDFGARRMELAKHFIRTNIE

TrEMBL top hitse value%identityAlignment
A0A1Y3BYX7 Multifunctional fusion protein1.3e-2833.77Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL---------------------------------------------CW----LWNGII-
        MLTY+SDHIRARQEVLG  I GGRIP PE+ PESF+L VREL                                              W    L NG I 
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL---------------------------------------------CW----LWNGII-

Query:  -----------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPL
                                 +FGPIKSGICAC N RVIG+ +      E               +  +     + +  Y   +PS    YI N  
Subjt:  -----------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPL

Query:  ALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVINRN-SQFYLAL---RTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGF
         LD PL ELE LVYC+    +     + +S  + KGN+ +      R+   FY A    +     R RG         +  Y++ P      + + +  F
Subjt:  ALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVINRN-SQFYLAL---RTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGF

Query:  VIPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEE---GPAYP--QVGRRKDFGARRMELAKHFIRTNIE
           R  D  +         +IR+QL +  LR+IIDY L EWKEL EE   G  +   +VGRRKDF  RRMELAKHFIRTNIE
Subjt:  VIPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEE---GPAYP--QVGRRKDFGARRMELAKHFIRTNIE

A0A3Q7YBU2 Multifunctional fusion protein2.2e-3335.37Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------
        MLTY+SDHI+ARQEVLG TIIGG IP P + PESF+LLVREL                                         W    L NG I      
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------

Query:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP
                            +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y   +PS    YI +   LD P
Subjt:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP

Query:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY
        LKELEGLVYCD              H + SKG   ++       S     ++     R RGS           Y++          F  +GF   R  + 
Subjt:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY

Query:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-------VGRRKDFGARRMELAKHFIRTNIE
        S  A       AIREQLVD  LR+I+D  L EWKELGEEG    +       VGRRK+F  RRMELAKHFIRTNIE
Subjt:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-------VGRRKDFGARRMELAKHFIRTNIE

A0A5H2Y107 Multifunctional fusion protein (Fragment)1.1e-2934.98Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWLWNGIISLLFGPIKSGICACENSRVIGERRFAMNNAESNLLILGSDTKISNGLYET
        MLTY+SDHIRARQEVLG TIIGG IP PE+ PESF+LLVREL  L   +   L+   +  I      ++    +  + N E    I+G  TK     Y+T
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWLWNGIISLLFGPIKSGICACENSRVIGERRFAMNNAESNLLILGSDTKISNGLYET

Query:  EMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPK--SKGNWSMVDSVINRNSQFYLAL-----RTWCHNR-----------------
          P    ++      +  P+K   G+  C  Y    +    +   P+   +     VDS I R    Y+ L       W   R                 
Subjt:  EMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPK--SKGNWSMVDSVINRNSQFYLAL-----RTWCHNR-----------------

Query:  -------RRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----V
               +   +  A+     R + S  ++   + + +  F   +  D  +         AIREQL D  LR+IIDY L EWKELGEEGP   +     V
Subjt:  -------RRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----V

Query:  GRRKDFGARRMELAKHFIRTNIE
        GRRKDF  RRMELAKHFIRTNIE
Subjt:  GRRKDFGARRMELAKHFIRTNIE

D7KRC2 Multifunctional fusion protein1.1e-3735.64Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWLWNGIISL------------------------------------------------
        MLTY+SDHIRARQEVLG TIIGG IP PE+ PESF+LLVREL  L   +I +                                                
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWLWNGIISL------------------------------------------------

Query:  -----------------LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKE
                         +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD PLKE
Subjt:  -----------------LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKE

Query:  LEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVINR------NSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREI
        LEGLVYCD   + +  G   YS P    N+S    +  +         F   +++W                  +Y + PLF      F  +GF I R  
Subjt:  LEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVINR------NSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREI

Query:  DYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
        + S  A       AIREQL D  LR+II+  L EWK+LGEEGP   +     + RRKDF  RRMELAKHFIRTNIE
Subjt:  DYSQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

G7JG05 Multifunctional fusion protein2.9e-3335.71Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------
        MLTY+SDHI+ARQEVLG TIIGG IP P + PESF+LLVREL                                         W    L NG I      
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL----------------------------------------CW----LWNGII------

Query:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP
                            +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y   +PS    YI +   LD P
Subjt:  ------------------SLLFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNP

Query:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY
        LKELEGLVYCD              H + SKG   ++ S  N  S     ++     R RGS           Y++          F  +GF   R  + 
Subjt:  LKELEGLVYCDEYHEAQNCGCSQYSHPK-SKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDY

Query:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ---------VGRRKDFGARRMELAKHFIRTNIE
        S  A       AIREQLVD  LR+I+D  L EWKELGEEG A  +         VGRRK+F  RRMEL KHFIRTNIE
Subjt:  SQIAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQ---------VGRRKDFGARRMELAKHFIRTNIE

SwissProt top hitse value%identityAlignment
A6MM27 DNA-directed RNA polymerase subunit beta'8.7e-2737.74Show/hide
Query:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG
        +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD PLKELEGLVYCD         
Subjt:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG

Query:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY
           ++ P +K                +L LR           G    +   R    PLF      F  +GF   R  + S  A       AIREQL DP 
Subjt:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY

Query:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIERTQM
        LR+I DY L EWKELGEEGP   +     +GRRKDF  RRMELAKHFIRT +E  +M
Subjt:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIERTQM

B1A926 DNA-directed RNA polymerase subunit beta'3.3e-2637.15Show/hide
Query:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG
        +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD PLKELEGLVYCD         
Subjt:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG

Query:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY
           ++ P +K       + +     F   +++W                  +Y + PLF      F  +GF   R  + S  A       AIREQL D  
Subjt:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY

Query:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
        L++IIDY   EWKELGEEGP   +     +GRRKDF  RRMELAKHFIRTNIE
Subjt:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

Q0G9X1 DNA-directed RNA polymerase subunit beta'3.3e-2637.15Show/hide
Query:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG
        +FGPIKSGICAC N RVIG+++    + E               +  +     +++  Y   +PS    YI N   LD PLKELEGLVYCD         
Subjt:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG

Query:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY
           ++ P +K       + +     F   +++W                  +Y + PLF      F  +GF   R  + S  A       AIREQL D  
Subjt:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY

Query:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
        LR+IID  L EWKELGE+GP   +     VGRRKDF  RRMELAKHFIRTNI+
Subjt:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

Q0ZJ29 DNA-directed RNA polymerase subunit beta'8.7e-2737.94Show/hide
Query:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG
        +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD PLKELEGLVYCD         
Subjt:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG

Query:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY
           ++ P  K       + +     F   +++W                  +Y + PLF      F  +GF   R  + S  A       AIREQL D  
Subjt:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY

Query:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
        LR+IIDY L EWKELGEEGP   +     +GRRKDF  RRMELAKHFIRTNIE
Subjt:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

Q4VZP2 DNA-directed RNA polymerase subunit beta'2.1e-2839.13Show/hide
Query:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG
        +FGPIKSGICAC N RVIG+++      E               +  +     +++  Y   +PS    YI N   LD PLKELEGLVYCD         
Subjt:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG

Query:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY
           ++ P +K       + +     F   +++W                  +Y + PLF      F  +GF   R  + S  A       AIREQL D  
Subjt:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY

Query:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
        LRLIIDY L EWKELGEEGPA  +     VGRRKDF  RRMELAKHFIRTNIE
Subjt:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein3.4e-2636.76Show/hide
Query:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG
        +FGPIKSGICAC N RVIG+ +      E               +  +     +++  Y   +PS    YI N   LD PLKELEGLVYCD         
Subjt:  LFGPIKSGICACENSRVIGERRFAMNNAES-------------NLLILGSDTKISNGLYETEMPSNSCIYIGNPLALDNPLKELEGLVYCDEYHEAQNCG

Query:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY
           ++ P +K       + +     F   +++W                  +Y + PLF      F  +GF I R  + S  A       AIREQL D  
Subjt:  CSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQIAHFLFFRCAIREQLVDPY

Query:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE
        LR+II+  L EWK+LGEEGP   +     + RRKDF  RRMELAKHFIRTNIE
Subjt:  LRLIIDYWLAEWKELGEEGPAYPQ-----VGRRKDFGARRMELAKHFIRTNIE

ATCG00190.1 RNA polymerase subunit beta3.9e-1483.33Show/hide
Query:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL
        MLTY+SDHIRARQEVLG TIIGG IP PE+ PESF+LLVREL
Subjt:  MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVREL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACTTATCAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTATTACGATCATTGGAGGAAGAATACCTAACCCTGAGGAGACTCCTGAATCTTTTCAATT
GCTCGTTCGAGAATTATGTTGGCTTTGGAATGGAATCATTTCCTTACTTTTCGGGCCTATAAAAAGCGGTATTTGTGCTTGTGAAAATTCTCGAGTAATCGGAGAAAGAA
GATTCGCGATGAACAATGCAGAGTCTAATTTGTTGATTCTCGGATCGGATACGAAGATATCAAATGGGCTATATGAAACAGAAATGCCCAGTAACTCTTGTATTTATATC
GGGAATCCTTTAGCTTTAGATAACCCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGAGTACCATGAAGCTCAGAATTGTGGGTGTAGTCAATACTCCCATCCCAA
ATCAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTCTCAGTTCTACCTGGCTTTAAGGACATGGTGTCATAACCGTCGACGAGGTTCAGTAGGGCCAG
CCAGGCCAGATCGAATGGAACGATACCAAGTCAGTCCCTTATTCCAAGGTACTCTTTATTCATTTGAATTAAGGGGATTTGTCATTCCAAGGGAAATAGACTACTCACAA
ATTGCACATTTCCTTTTTTTCCGATGTGCTATACGAGAACAATTAGTCGATCCGTATTTGCGACTTATTATAGATTATTGGTTGGCAGAATGGAAAGAATTAGGCGAAGA
GGGACCTGCATATCCACAAGTTGGAAGAAGAAAGGATTTTGGGGCTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAAAGAACCCAAATGTATGGTT
TGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAGACCGATCATTCAGATAGTTGGGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTACTTATCAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTATTACGATCATTGGAGGAAGAATACCTAACCCTGAGGAGACTCCTGAATCTTTTCAATT
GCTCGTTCGAGAATTATGTTGGCTTTGGAATGGAATCATTTCCTTACTTTTCGGGCCTATAAAAAGCGGTATTTGTGCTTGTGAAAATTCTCGAGTAATCGGAGAAAGAA
GATTCGCGATGAACAATGCAGAGTCTAATTTGTTGATTCTCGGATCGGATACGAAGATATCAAATGGGCTATATGAAACAGAAATGCCCAGTAACTCTTGTATTTATATC
GGGAATCCTTTAGCTTTAGATAACCCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGAGTACCATGAAGCTCAGAATTGTGGGTGTAGTCAATACTCCCATCCCAA
ATCAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTCTCAGTTCTACCTGGCTTTAAGGACATGGTGTCATAACCGTCGACGAGGTTCAGTAGGGCCAG
CCAGGCCAGATCGAATGGAACGATACCAAGTCAGTCCCTTATTCCAAGGTACTCTTTATTCATTTGAATTAAGGGGATTTGTCATTCCAAGGGAAATAGACTACTCACAA
ATTGCACATTTCCTTTTTTTCCGATGTGCTATACGAGAACAATTAGTCGATCCGTATTTGCGACTTATTATAGATTATTGGTTGGCAGAATGGAAAGAATTAGGCGAAGA
GGGACCTGCATATCCACAAGTTGGAAGAAGAAAGGATTTTGGGGCTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAAAGAACCCAAATGTATGGTT
TGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAGACCGATCATTCAGATAGTTGGGGGTAA
Protein sequenceShow/hide protein sequence
MLTYQSDHIRARQEVLGITIIGGRIPNPEETPESFQLLVRELCWLWNGIISLLFGPIKSGICACENSRVIGERRFAMNNAESNLLILGSDTKISNGLYETEMPSNSCIYI
GNPLALDNPLKELEGLVYCDEYHEAQNCGCSQYSHPKSKGNWSMVDSVINRNSQFYLALRTWCHNRRRGSVGPARPDRMERYQVSPLFQGTLYSFELRGFVIPREIDYSQ
IAHFLFFRCAIREQLVDPYLRLIIDYWLAEWKELGEEGPAYPQVGRRKDFGARRMELAKHFIRTNIERTQMYGLMSVYYLFCSSSQGETDHSDSWG