; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G003090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S2, chloroplastic
Genome locationCmo_Chr13:3326102..3326780
RNA-Seq ExpressionCmoCh13G003090
SyntenyCmoCh13G003090
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQM08573.1 hypothetical protein [Colocasia esculenta]6.7e-1456.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQPSSEKGCPHVEETIISLANISIW
        +GK FLIV  K K ADSVA AA +AR        LGG+LTNWSTTE +  KF+DLR EQ+ G LN+   ++   +VEETII LANIS W
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQPSSEKGCPHVEETIISLANISIW

QJS52344.1 ribosomal protein S2 [Indofevillea khasiana]3.3e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

YP_009236269.1 ribosomal protein S2 [Gynostemma pentaphyllum]3.3e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

YP_009430616.1 ribosomal protein S2 [Gynostemma cardiospermum]3.3e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

YP_010119723.1 ribosomal protein S2 [Hemsleya zhejiangensis]3.3e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

TrEMBL top hitse value%identityAlignment
A0A109WWM8 30S ribosomal protein S2, chloroplastic1.6e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

A0A1P8LE54 Ribosomal protein S21.6e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

A0A2Z2CQF0 30S ribosomal protein S2, chloroplastic1.6e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

X2F5D2 30S ribosomal protein S2, chloroplastic1.6e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

X2F6M8 Ribosomal protein S2 (Fragment)1.6e-1368.18Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATRAR        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

SwissProt top hitse value%identityAlignment
A0ZZ24 30S ribosomal protein S2, chloroplastic8.3e-1565.15Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAA RAR        LGG+LTNW TTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

B1A924 30S ribosomal protein S2, chloroplastic1.8e-1465.15Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAA RAR        LGG+LTNWSTTE + +KF+DLRTEQK G LN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

Q2L8Z6 30S ribosomal protein S2, chloroplastic8.3e-1565.15Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAA RAR        LGG+LTNW TTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

Q49L09 30S ribosomal protein S2, chloroplastic6.3e-1566.67Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAA RAR        LGG+LTNWSTTE + +KF+DLRTEQKAG LN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

Q4VZP4 30S ribosomal protein S2, chloroplastic1.3e-1566.67Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K ADSVARAATR R        LGG+LTNWSTTE + +KF+DLRTEQK GGLN+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ

Arabidopsis top hitse value%identityAlignment
ATCG00160.1 ribosomal protein S24.2e-1460.61Show/hide
Query:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ
        +GKQFLIV  K K AD V+RAA RAR        LGG+LTNWSTTE + +KF+DLRTEQK  G N+
Subjt:  QGKQFLIVDIKKKVADSVARAATRAR--------LGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGCTTGGATCGTGGGCAGGGCAAACAATTCCTCATTGTTGATATCAAAAAGAAAGTAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGCTCGGGGGGAT
ATTAACAAATTGGTCTACTACCGAAATGAAACAGAATAAGTTCAAGGACTTGAGAACGGAACAAAAGGCGGGGGGACTCAACCAACCGTCTTCCGAAAAGGGATGCCCCC
ATGTTGAAGAGACAATTATCTCACTTGCAAACATATCCATCTGGGCGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGCTTGGATCGTGGGCAGGGCAAACAATTCCTCATTGTTGATATCAAAAAGAAAGTAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGCTCGGGGGGAT
ATTAACAAATTGGTCTACTACCGAAATGAAACAGAATAAGTTCAAGGACTTGAGAACGGAACAAAAGGCGGGGGGACTCAACCAACCGTCTTCCGAAAAGGGATGCCCCC
ATGTTGAAGAGACAATTATCTCACTTGCAAACATATCCATCTGGGCGGGATGA
Protein sequenceShow/hide protein sequence
MNGLDRGQGKQFLIVDIKKKVADSVARAATRARLGGILTNWSTTEMKQNKFKDLRTEQKAGGLNQPSSEKGCPHVEETIISLANISIWAG