CuGenDBv2

Gene ID	CmoCh13G003100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	Cmo_Chr13:3338036..3342265
RNA-Seq Expression	CmoCh13G003100
Synteny	CmoCh13G003100
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR005162 - Retrotransposon gag domain IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

2.0e-161

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

TYK11702.1 F15O4.13 [Cucumis melo var. makuwa]

2.0e-161

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.0e-161

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

2.0e-161

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

XP_022932136.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata]

1.7e-171

82.44

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHEDRDGGVKLKIPPFCGT
        MSHNGEAVPPVPDLNTTILQAIQGMM+MMMEDRQERRAQQQRQERT                             PRRMERVHEDRDGGVKLKIPPFC T
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHEDRDGGVKLKIPPFCGT

Query:  ADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQ
        ADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHA  WYQHLKSERRRKEE+P+ETWEELKE MRKRY PKHYERNLKTKLQGLRQGTKSVAEYYQ
Subjt:  ADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQ

Query:  EMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTA
        EMETMM+RA VREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDM HYALKIEDQLKEEKEHSKRYTSRT+ FSNS TWNKDSF+N+N+SMSPK KFV A
Subjt:  EMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTA

Query:  KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNSISLITRKEL
        KRVEAES N K NEASKTV+EKSSSIQCWKCKGFGHMSKECVN+KVMVIRNGILDSDDE             +YDDEYVEEGNSISLITR+ L
Subjt:  KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNSISLITRKEL

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BWE8 F15O4.13

9.9e-162

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

A0A5D3C3D3 F15O4.13

9.9e-162

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

A0A5D3CK70 F15O4.13

9.9e-162

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

A0A5D3DRJ1 F15O4.13

9.9e-162

73.57

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK
        IPPF GTADSE YLQWERKIEHVFDCNT+SENKKM+LAIAEFTN+AS+WY +LKSERRRKEE+PIETWEELKE MRKR+ PKHYER+LKTKLQ LRQGTK
Subjt:  IPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTK

Query:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP
        SVAEYY+EMET++ RA+++E+EEDTMSRFLGGLN+EIAHLVDRNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T  FS+SNTWNKD F+N+N+SM  
Subjt:  SVAEYYQEMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSP

Query:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE
        +GKFV A++VE ES N K  EASK V+EK+SSIQCWKCKGFGHMSK+C+N++VMV+RNG++DS+DECE++D+QL EE     DDEY+EEG+SISLITR+ 
Subjt:  KGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEI-AAYDDEYVEEGNSISLITRKE

Query:  L
        L
Subjt:  L

A0A6J1EVI6 LOW QUALITY PROTEIN: uncharacterized protein LOC111438459

8.1e-172

82.44

Show/hide

Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHEDRDGGVKLKIPPFCGT
        MSHNGEAVPPVPDLNTTILQAIQGMM+MMMEDRQERRAQQQRQERT                             PRRMERVHEDRDGGVKLKIPPFC T
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHEDRDGGVKLKIPPFCGT

Query:  ADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQ
        ADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHA  WYQHLKSERRRKEE+P+ETWEELKE MRKRY PKHYERNLKTKLQGLRQGTKSVAEYYQ
Subjt:  ADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQ

Query:  EMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTA
        EMETMM+RA VREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDM HYALKIEDQLKEEKEHSKRYTSRT+ FSNS TWNKDSF+N+N+SMSPK KFV A
Subjt:  EMETMMKRAKVREEEEDTMSRFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTA

Query:  KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNSISLITRKEL
        KRVEAES N K NEASKTV+EKSSSIQCWKCKGFGHMSKECVN+KVMVIRNGILDSDDE             +YDDEYVEEGNSISLITR+ L
Subjt:  KRVEAESFNGKMNEASKTVKEKSSSIQCWKCKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNSISLITRKEL

SwissProt top hits

e value

%identity

Alignment

A4QJA2 ATP synthase subunit c, chloroplastic

3.9e-06

93.94

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Query:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG
        MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Subjt:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG

A8SE66 ATP synthase subunit c, chloroplastic

1.8e-06

96.97

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Query:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG
        MNPLISSASVIAAGLA GLASIGPGVGQGTAAG
Subjt:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG

Q3V547 ATP synthase subunit c, chloroplastic

3.9e-06

93.94

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Query:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG
        MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Subjt:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG

Q4FGF2 ATP synthase subunit c, chloroplastic

3.9e-06

93.94

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Query:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG
        MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Subjt:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG

Q85FN2 ATP synthase subunit c, chloroplastic

3.9e-06

93.94

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Query:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG
        MNPLIS+ASVIAAGLA GLASIGPGVGQGTAAG
Subjt:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG

Arabidopsis top hits

e value

%identity

Alignment

AT4G07350.1 unknown protein

9.9e-05

28.05

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Query:  EAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKL
        E YL+WE+ ++  F    +    +   A++  T  A  W+     +R   +E PI  W +LKE++R +YA +   R+ K  +
Subjt:  EAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKL

ATCG00140.1 ATP synthase subunit C family protein

3.6e-07

90.91

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Query:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG
        MNPL+S+ASVIAAGLA GLASIGPGVGQGTAAG
Subjt:  MNPLISSASVIAAGLAGGLASIGPGVGQGTAAG

Sequences

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CDS sequence

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ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAG
GGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTA
TGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAA
AGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAA
ATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTA
AATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCT
AGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAA
GGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAA
AAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAG
TGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCT
TGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGAACTTATTATGAATCCACTGATTTCTTCCGCTTCCG
TTATTGCTGCTGGATTGGCCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCAGGCTAA

mRNA sequence

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Protein sequence

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MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWE
RKIEHVFDCNTYSENKKMRLAIAEFTNHASDWYQHLKSERRRKEENPIETWEELKEVMRKRYAPKHYERNLKTKLQGLRQGTKSVAEYYQEMETMMKRAKVREEEEDTMS
RFLGGLNREIAHLVDRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTSIFSNSNTWNKDSFMNKNDSMSPKGKFVTAKRVEAESFNGKMNEASKTVKEKSSSIQCWK
CKGFGHMSKECVNEKVMVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNSISLITRKELIMNPLISSASVIAAGLAGGLASIGPGVGQGTAAG

CmoCh13G003100 (gene) of Cucurbita moschata (Rifu) v1 genome