CuGenDBv2

Gene ID	CmoCh13G003190
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Pol protein
Genome location	Cmo_Chr13:3521587..3523607
RNA-Seq Expression	CmoCh13G003190
Synteny	CmoCh13G003190
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.1e-98

71.71

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF YN+SYQAT+GMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GVLRF R+GKL+ RFIGPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D+KPL++DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELFRAETTAPQPIASTSFRAPSH
        TLRN+EI LVKVLWRNH++EEATWERE +M SRYPEL RAE        S    AP H
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELFRAETTAPQPIASTSFRAPSH

KAA0053234.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.0e-99

74.79

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQAT+GMAPFEALY K CRS +CWDEVGE++L+GP LVQ+TNEAI+KIK+RMRTAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GVLRF R+GKL++ F+GPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D++PL +DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLR++EI LVKVLWRNH++EEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

1.4e-98

74.79

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Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQAT+GMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GV+RF R+GKL+ RF+GPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D+KPL +DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLRN+EI LVKVLWRNH+LEEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

KAA0063119.1 pol protein [Cucumis melo var. makuwa]

2.5e-98

73.95

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQAT+GMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        +GDKVF KVA MKGVLRF R+GKL+ RF+GPFE+LER+G VAYRLALPP LS VHNVFHVSMLR Y+ DPSHV+D++PL +D++L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLRN+EI LVKVLWRNH++EEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

KAA0063715.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.5e-98

74.37

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Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQATLGMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GVLRF R+GKL+ RF+GPFEI+ER+G VAYR+ALPP LS VH+VFHVSMLR Y+ DPSHV+D+KPL +DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLRN+EI LVKVLWRNH++EEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U330 Reverse transcriptase

5.3e-99

71.71

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF YN+SYQAT+GMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GVLRF R+GKL+ RFIGPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D+KPL++DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELFRAETTAPQPIASTSFRAPSH
        TLRN+EI LVKVLWRNH++EEATWERE +M SRYPEL RAE        S    AP H
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELFRAETTAPQPIASTSFRAPSH

A0A5A7UDB1 Reverse transcriptase

2.4e-99

74.79

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQAT+GMAPFEALY K CRS +CWDEVGE++L+GP LVQ+TNEAI+KIK+RMRTAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GVLRF R+GKL++ F+GPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D++PL +DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLR++EI LVKVLWRNH++EEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

A0A5A7UP94 Pol protein

7.0e-99

74.79

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQAT+GMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GV+RF R+GKL+ RF+GPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D+KPL +DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLRN+EI LVKVLWRNH+LEEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

A0A5A7VBY8 Pol protein

1.2e-98

73.95

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQAT+GMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        +GDKVF KVA MKGVLRF R+GKL+ RF+GPFE+LER+G VAYRLALPP LS VHNVFHVSMLR Y+ DPSHV+D++PL +D++L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLRN+EI LVKVLWRNH++EEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

A0A5A7VCR4 Ty3-gypsy retrotransposon protein

1.2e-98

74.37

Show/hide

Query:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE
        MLRA  L+F GSWD+HLHL+EF+YN+SYQATLGMAPFEALY K CRS +CW EVGE++L+GP LVQ+TNEAI+KI++RM TAQSR+KSYADVRR+DLEFE
Subjt:  MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFE

Query:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK
        VGDKVF KVA M+GVLRF R+GKL+ RF+GPFEI+ER+G VAYR+ALPP LS VH+VFHVSMLR Y+ DPSHV+D+KPL +DE+L+Y E+PV+++ REVK
Subjt:  VGDKVFFKVALMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVK

Query:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF
        TLRN+EI LVKVLWRNH++EEATWERE +M SRYPELF
Subjt:  TLRNREIALVKVLWRNHQLEEATWERE-EMMSRYPELF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTACGGGCCTATATGTTGGACTTTGCCGGTAGCTGGGACACACACTTGCATCTCATAGAGTTCTCTTATAACGACAGTTATCAAGCGACGTTGGGTATGGCACCTTT
CGAGGCCTTATACAGGAAGAAGTGTCGATCCCGATTGTGTTGGGACGAAGTGGGAGAACGCAAGCTGTTGGGCCCCAATTTAGTGCAAACAACTAATGAGGCTATCAAGA
AAATAAAGGCTAGAATGCGTACGGCACAAAGCAGGAAAAAGAGCTATGCAGATGTGAGACGAAGAGATTTGGAATTTGAGGTGGGAGACAAAGTATTCTTTAAGGTGGCT
CTCATGAAAGGCGTTCTTAGGTTCGGGCGCAAAGGGAAGTTAAACACACGCTTCATTGGACCATTTGAGATCTTGGAGCGAGTGGGACAAGTAGCTTACCGGTTGGCCCT
ACCACCTATACTCTCAGGAGTCCACAATGTGTTCCATGTATCGATGTTGCGACTATACATATCTGACCCATCACATGTGATAGATTTCAAACCTCTACGGTTGGATGAGA
GTTTGAACTACGAGGAGGAACCAGTGCAAATTGTGGATAGAGAAGTGAAAACCTTACGTAATCGAGAGATCGCGTTGGTCAAGGTATTATGGCGGAATCACCAGCTGGAA
GAAGCCACTTGGGAACGAGAGGAAATGATGAGCAGATACCCTGAGCTCTTTAGAGCGGAAACCACAGCCCCACAACCGATTGCTTCGACATCGTTCCGCGCCCCTTCTCA
TATTAGACAACATCCGCCCAACACCACATCGCCGCCGCAAGGGAACGACATCGTCGTTGCCAAAACCGACCTCAAGAGGGTTAGACGTAGCAAAGGTTCAACGCCTGCGA
AGGAGGAAGGCTCGATTCGAGGGGAATCGGATCGTCGTTGGTTAGGAAACACCAAGAACGCAGCTTCTCAGGCGAAGCTGTGGCACGGAGGTGACGAGTAG

mRNA sequence

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Protein sequence

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MLRAYMLDFAGSWDTHLHLIEFSYNDSYQATLGMAPFEALYRKKCRSRLCWDEVGERKLLGPNLVQTTNEAIKKIKARMRTAQSRKKSYADVRRRDLEFEVGDKVFFKVA
LMKGVLRFGRKGKLNTRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLRLDESLNYEEEPVQIVDREVKTLRNREIALVKVLWRNHQLE
EATWEREEMMSRYPELFRAETTAPQPIASTSFRAPSHIRQHPPNTTSPPQGNDIVVAKTDLKRVRRSKGSTPAKEEGSIRGESDRRWLGNTKNAASQAKLWHGGDE

CmoCh13G003190 (gene) of Cucurbita moschata (Rifu) v1 genome