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CmoCh13G003250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111469948
Genome locationCmo_Chr13:3971117..3971413
RNA-Seq ExpressionCmoCh13G003250
SyntenyCmoCh13G003250
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022973897.1 uncharacterized protein LOC111472489, partial [Cucurbita maxima]2.0e-3595.45Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLNTEIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]4.4e-3594.32Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
XP_023521183.1 uncharacterized protein LOC111784872 [Cucurbita pepo subsp. pepo]4.4e-3594.32Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
XP_023530046.1 uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo]4.4e-3594.32Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
XP_023553652.1 uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]4.4e-3594.32Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRL+LDEDMEALMARFLNGLNTEIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
TrEMBL top hitse value%identityAlignment
A0A6J1EQJ1 uncharacterized protein LOC1114365304.8e-3594.32Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLN EIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
A0A6J1EVV9 uncharacterized protein LOC1114364634.8e-3594.32Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLN EIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
A0A6J1G2Q3 uncharacterized protein LOC1114502864.8e-3594.32Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLN EIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699482.0e-3390.91Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMD+LELDEDMEALMA FLNGLNTEIA+K+DLQPYSNIEELLHI IKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
A0A6J1I8S0 uncharacterized protein LOC1114724899.6e-3695.45Show/hide
Query:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
        MAQKLQALKQGRKSVED YKEMDTLMDRLELDEDMEALMARFLNGLNTEIADK+DLQPYSNIEELLHIAIKIERQIQRRSQRY SK F
Subjt:  MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAAAAGCTTCAAGCATTGAAACAGGGACGCAAATCTGTGGAGGATTCTTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGC
TCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGTCTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGA
GGCAAATCCAACGAAGGTCTCAACGGTATTTTTCTAAAAACTTTTCTCAATTATACTTCTACATGGAAAAAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACAAAAGCTTCAAGCATTGAAACAGGGACGCAAATCTGTGGAGGATTCTTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGC
TCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGTCTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGA
GGCAAATCCAACGAAGGTCTCAACGGTATTTTTCTAAAAACTTTTCTCAATTATACTTCTACATGGAAAAAGGATAG
Protein sequenceShow/hide protein sequence
MAQKLQALKQGRKSVEDSYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKSDLQPYSNIEELLHIAIKIERQIQRRSQRYFSKNFSQLYFYMEKG