; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G003280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionexopolygalacturonase-like
Genome locationCmo_Chr13:4089083..4089633
RNA-Seq ExpressionCmoCh13G003280
SyntenyCmoCh13G003280
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022927090.1 polygalacturonase-like [Cucurbita moschata]1.1e-7592.36Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVDAQSSADVVF LKRYGNIV GTDITKAL NAWKDACT NRS AIVIPGGIF VKEGIFKGPCNSPI FQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL
        DRLTLSG+GVFDGQGKAAWKKNDC  RINCAQLPIVSNIPSAFLLNLGN+VVFR LL
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL

XP_022927478.1 exopolygalacturonase-like [Cucurbita moschata]5.1e-7097.78Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVD QSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI
        DRLTLSGEGVFDGQGKAAWKKNDC  RINCAQLPI
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI

XP_022933299.1 exopolygalacturonase-like [Cucurbita moschata]1.8e-7098.52Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI
        DRLTLSGEGVFDGQGKAAWKKNDC  RINCAQLPI
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI

XP_022933347.1 polygalacturonase-like, partial [Cucurbita moschata]6.7e-7097.78Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTV+AQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI
        DRLTLSGEGVFDGQGKAAWKKNDC  RINCAQLPI
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI

XP_022970254.1 polygalacturonase-like [Cucurbita maxima]3.7e-7692.36Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGI+ VKEGIFKGPCNSPIDFQLGGTLQAPKSLQG+NWITFE I
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL
        DRLTLSGEGVFDGQGKAAWKKNDC   INCAQLPIVSN+PS FLLNL +LVVFR LL
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL

TrEMBL top hitse value%identityAlignment
A0A6J1EL45 exopolygalacturonase-like2.5e-7097.78Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVD QSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI
        DRLTLSGEGVFDGQGKAAWKKNDC  RINCAQLPI
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI

A0A6J1EMW6 polygalacturonase-like5.2e-7692.36Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVDAQSSADVVF LKRYGNIV GTDITKAL NAWKDACT NRS AIVIPGGIF VKEGIFKGPCNSPI FQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL
        DRLTLSG+GVFDGQGKAAWKKNDC  RINCAQLPIVSNIPSAFLLNLGN+VVFR LL
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL

A0A6J1EZD2 exopolygalacturonase-like8.5e-7198.52Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI
        DRLTLSGEGVFDGQGKAAWKKNDC  RINCAQLPI
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI

A0A6J1EZI2 polygalacturonase-like3.2e-7097.78Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTV+AQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI
        DRLTLSGEGVFDGQGKAAWKKNDC  RINCAQLPI
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPI

A0A6J1I503 polygalacturonase-like1.8e-7692.36Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI
        MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGI+ VKEGIFKGPCNSPIDFQLGGTLQAPKSLQG+NWITFE I
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERI

Query:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL
        DRLTLSGEGVFDGQGKAAWKKNDC   INCAQLPIVSN+PS FLLNL +LVVFR LL
Subjt:  DRLTLSGEGVFDGQGKAAWKKNDC--RINCAQLPIVSNIPSAFLLNLGNLVVFRRLL

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)7.0e-2250.51Show/hide
Query:  DITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCRIN
        D T+AL  AWK+AC S   S I++P G F V     +GPC S I  QL GTL+A   P  ++G  WI   +ID LT+ G GVFDGQGK+AW +NDC  N
Subjt:  DITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCRIN

Q05967 Polygalacturonase7.8e-2139.1Show/hide
Query:  LLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITFER
        L+L F      S   VF + +YG      DI++AL NA+K+AC S   S IVIP G F + +   +GPC SP++ Q+  TL+A   P  L+   W+T  +
Subjt:  LLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITFER

Query:  IDRLTLSGEGVFDGQGKAAWKKNDCRINCAQLP
        +D+ T+SG G+ DGQ  AAW+    +  C +LP
Subjt:  IDRLTLSGEGVFDGQGKAAWKKNDCRINCAQLP

Q39786 Polygalacturonase3.0e-2034.01Show/hide
Query:  LLLLDFTVDAQSSADVVFPLKRYGNIVPG-TDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITF
        +LLL F   ++  +D    + ++G    G TD++K   +AWK+AC S   S +VIP G + + +   +GPC +PI+  + GT+QA   P + +  NW+ F
Subjt:  LLLLDFTVDAQSSADVVFPLKRYGNIVPG-TDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITF

Query:  ERIDRLTLSGEGVFDGQGKAAWKKNDCRINCAQLPIVSNIPSAFLLN
          ++   + G G+FDGQG  A++KN C     +  +  NI   FL N
Subjt:  ERIDRLTLSGEGVFDGQGKAAWKKNDCRINCAQLPIVSNIPSAFLLN

Q40312 Polygalacturonase1.7e-2041.18Show/hide
Query:  FTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQG-NNWITFERIDR
        F  D  ++   V  + ++G   P +DI +AL +AW +AC S  ++ IVIP G + +     KGPC +PI+ Q+ GT+QAP     ++G   W  F  +D 
Subjt:  FTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQG-NNWITFERIDR

Query:  LTLSGEGVFDGQGKAAWKK
        LTLSG+GVFDGQG   +KK
Subjt:  LTLSGEGVFDGQGKAAWKK

Q6H9K0 Exopolygalacturonase (Fragment)7.8e-2143.22Show/hide
Query:  SADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPC-NSPIDFQLGGTLQA---PKSLQGNNWITFERIDRLTLSGEG
        S+  VF +  YG    G DI++A+  AWK AC S   S ++IP G +N+ E   +GPC  S I FQ+ G ++A   P   + + W++F RID LT+SG G
Subjt:  SADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPC-NSPIDFQLGGTLQA---PKSLQGNNWITFERIDRLTLSGEG

Query:  VFDGQGKAAWKKNDCRIN
          DGQG+ AW KN+C  N
Subjt:  VFDGQGKAAWKKNDCRIN

Arabidopsis top hitse value%identityAlignment
AT1G17150.1 Pectin lyase-like superfamily protein4.7e-2140.29Show/hide
Query:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPG-TDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQGNNWIT
        +LLL+  T     +   VF ++ YG    G  D T A  NAWKDAC  N  S + IP G F +    F GPC+  I F + GTL AP +   ++   WI 
Subjt:  MLLLLDFTVDAQSSADVVFPLKRYGNIVPG-TDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQGNNWIT

Query:  FERIDRLTLSGEGVFDGQGKAAWKKNDCR--INCAQLPI
        F  I+ LT+ G+G  DGQGK +W   DC+   NC +L I
Subjt:  FERIDRLTLSGEGVFDGQGKAAWKKNDCR--INCAQLPI

AT3G07820.1 Pectin lyase-like superfamily protein1.2e-2143.7Show/hide
Query:  GTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR--
        G+DIT+AL  A+  AC S+  S +VIP G F + E   +GPC +PI+  L GT++A   ++QG   W+ F  ID   L+G G FDG+G AAW+ N+C   
Subjt:  GTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR--

Query:  INCAQLPIVSNIPSAFLLN
          C +LPI  +I   F+LN
Subjt:  INCAQLPIVSNIPSAFLLN

AT3G07830.1 Pectin lyase-like superfamily protein2.7e-2144.04Show/hide
Query:  PGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR-
        PG+DIT+AL  A+  AC S     +VIP G F + E +  GPC SP++  L GT+ A   S+ G   W+ F+R+D   L+G G FDG+G AAW+ N+C  
Subjt:  PGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR-

Query:  -INCAQLPI
           C +LPI
Subjt:  -INCAQLPI

AT3G07840.1 Pectin lyase-like superfamily protein2.1e-2144.04Show/hide
Query:  PGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR-
        PG+DIT+AL  A+  AC +  +S +VI  G F + E    GPC +P++  L GTL+A  K++QG   W+ F RI+   L+G G+FDG+G AAW+ N+C  
Subjt:  PGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR-

Query:  -INCAQLPI
           C +LPI
Subjt:  -INCAQLPI

AT5G48140.1 Pectin lyase-like superfamily protein9.4e-2242.34Show/hide
Query:  NIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDC
        N  PG+DIT AL  A+ +AC     S ++IP G + + E +  GPC +PI   L GT++A  +  G   W+ F  I+   L+G GVFDG+G AAW+ N+C
Subjt:  NIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDC

Query:  R--INCAQLPI
            NC +LPI
Subjt:  R--INCAQLPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATTATTGTTAGATTTTACCGTCGATGCTCAATCTAGTGCCGATGTTGTTTTTCCTTTGAAAAGATATGGTAACATAGTGCCTGGTACTGACATCACGAAGGCTTT
AGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAATGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCC
CAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTT
TTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCGCATAAATTGTGCCCAACTCCCCATTGTAAGCAATATTCCTTCAGCTTTCCTTCTCAATCTCGGGAA
TCTTGTTGTTTTTAGGCGTCTTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTATTATTGTTAGATTTTACCGTCGATGCTCAATCTAGTGCCGATGTTGTTTTTCCTTTGAAAAGATATGGTAACATAGTGCCTGGTACTGACATCACGAAGGCTTT
AGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAATGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCC
CAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTT
TTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCGCATAAATTGTGCCCAACTCCCCATTGTAAGCAATATTCCTTCAGCTTTCCTTCTCAATCTCGGGAA
TCTTGTTGTTTTTAGGCGTCTTCTCTAA
Protein sequenceShow/hide protein sequence
MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERIDRLTLSGEGV
FDGQGKAAWKKNDCRINCAQLPIVSNIPSAFLLNLGNLVVFRRLL