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CmoCh13G003380 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003380
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationCmo_Chr13:4345698..4348234
RNA-Seq ExpressionCmoCh13G003380
SyntenyCmoCh13G003380
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]1.2e-2688.41Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVKMEDS
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
XP_022927635.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata]5.5e-2789.86Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]5.5e-2789.86Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
XP_023520390.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-2688.41Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMED+
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]1.2e-2688.41Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMED+
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
TrEMBL top hitse value%identityAlignment
A0A0A0L450 Mediator of RNA polymerase II transcription subunit 111.7e-2682.19Show/hide
Query:  WNDCVQYH---WDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        W   +++H    DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQVK+EDS
Subjt:  WNDCVQYH---WDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 115.9e-2788.41Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVKMEDS
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 111.7e-2686.96Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVK+ED+
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
A0A6J1EPI6 Mediator of RNA polymerase II transcription subunit 112.6e-2789.86Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 112.6e-2789.86Show/hide
Query:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
        ++ +Q+  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
Subjt:  NDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 111.4e-1770.37Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY
        DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein1.0e-1870.37Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY
        DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAATGATTGTGTTCAGTATCACTGGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAG
GATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAATGATTGTGTTCAGTATCACTGGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCGTTCGAGAAGTGTGATTATAGTTCAAG
GATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGTGAAAATGGAAGATTCTTGAGGCA
GGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCGTGACTTTAATGACGAGCTTCATCGACCTATGAGGATAAGATTATCGACATCCTTAGGAGCATTCTGCAA
CTTGTAGTATCTAAGCATCCATTTCTAGTTCTTGTTTTTTTCTCGTTATTTGATGAATGTCATTACTGTCTATTATCTGAAAATACTTTCCTTCGAAGTTACACGAATAG
ATGTAACGATATTTGTCACTTGTCACATATGGTTGTAGTATCTCATTCTCATCATAAATCAAATGATCATTTGTAACTATTTAGAAGCACCCACACAAAAAATTGAGTCA
CAGTCGTTATTTTTTTGACATTGTTGTGAGGAATGTTCAAATTTGACGATTTTGACATCTACGATCGATGTCCATCACCCAAAAATGATTTTTGCTCCTGACCAGTTTAT
GTTCGACTAACATCGGG
Protein sequenceShow/hide protein sequence
MWNDCVQYHWDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS