; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G003640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr13:4685903..4686829
RNA-Seq ExpressionCmoCh13G003640
SyntenyCmoCh13G003640
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583697.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.3e-17398.38Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR M
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMF EVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK EVADRV
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMKQH
        QTRF+KQH
Subjt:  QTRFMKQH

KAG7019344.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-17498.7Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR M
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMF EVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK EVADRV
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMKQH
        QTRFMKQH
Subjt:  QTRFMKQH

XP_022927399.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata]2.1e-176100Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMKQH
        QTRFMKQH
Subjt:  QTRFMKQH

XP_022973156.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima]9.6e-16995.81Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKPQDIIPFYAALLQACSSTKNH TLKQIHALTIRLGISHHDFIRTKLASTYAAC HLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR M
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGKPIDRHTLPPV+KSCTGLSSLRLGRQVHG VVINGFSTDLPNLNALITMYGKCGDLG+ARKVFDGMPERNEVSWSALMAGYGVHGMF EVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLI--MEMEIEPDEALWGALLSACRIHGKGEVAD
        MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF+L+PGLEHYTCMVDLLGRVGQVEEAEKLI  MEMEIEPDEALWGALLSACRIHGK EVAD
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLI--MEMEIEPDEALWGALLSACRIHGKGEVAD

Query:  RVQTRFMKQH
        RVQTRFMKQH
Subjt:  RVQTRFMKQH

XP_023520705.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo]8.4e-17397.73Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR M
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        L+SGKPIDRHTLPPV+KSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMF EVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALL ACRIHGK EVADRV
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMKQH
        QTRFMKQH
Subjt:  QTRFMKQH

TrEMBL top hitse value%identityAlignment
A0A0A0K1F7 Uncharacterized protein2.5e-15488.93Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LPQATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFR M
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGK IDRHTLPPV+KSCTGLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMF EVF LFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+LSACRIHGK +VADRV
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMKQ
        Q RF+KQ
Subjt:  QTRFMKQ

A0A5A7UT42 Pentatricopeptide repeat-containing protein2.4e-14985.99Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKP +IIPFYAALL+ACSSTKN  TLKQIHALTI L ISHH FIRTKLASTYAAC  LPQA TIFSFATRRPT+LFNALIRAHSSLRLFSQSLSIFR M
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGK  DRHT P V+KSCTGLSSLRLGRQVHGA++INGFS DLP+LNALITMY KCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMF EVF LFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MV+EGQ+PDELTFT+LLTACSHGGLIE+GKEYF  M+M F LRPGL+HYTCMVDLLGR+GQVEEAEKLIMEME+EPDEALWGA+LSACRIHG+ +VADRV
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMKQ
        Q RF+KQ
Subjt:  QTRFMKQ

A0A6J1CNN2 pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like6.7e-15287.25Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MP  Q  +PFYAALL+ACSSTKN  +L+QIHALTIRL ISHHDFIRTKL S+YAAC  L QAT IFSFATRRPTFLFN LIRAHSSLRLF QSLSIFRRM
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGKPIDRHTLP V+KSCTGLSSLRLGRQVHG VVINGFS DLPN NALITMYGKCGDLGVARKVFD MPERNEVSWSALMAGYGVHG F EVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MVE+GQKPD LTFTALLTACSHGGL+ERGKEYFGMM+MGFDLRPGLEHYTCMVD+LGR GQVEEAEKLIMEME+EPDEALWGALLSACRIHGK EVADR+
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMK
        Q RF++
Subjt:  QTRFMK

A0A6J1EHW3 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like1.0e-176100Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
        MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV

Query:  QTRFMKQH
        QTRFMKQH
Subjt:  QTRFMKQH

A0A6J1I7X0 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like4.6e-16995.81Show/hide
Query:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM
        MPKPQDIIPFYAALLQACSSTKNH TLKQIHALTIRLGISHHDFIRTKLASTYAAC HLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR M
Subjt:  MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRM

Query:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
        LLSGKPIDRHTLPPV+KSCTGLSSLRLGRQVHG VVINGFSTDLPNLNALITMYGKCGDLG+ARKVFDGMPERNEVSWSALMAGYGVHGMF EVFGLFER
Subjt:  LLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLI--MEMEIEPDEALWGALLSACRIHGKGEVAD
        MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF+L+PGLEHYTCMVDLLGRVGQVEEAEKLI  MEMEIEPDEALWGALLSACRIHGK EVAD
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLI--MEMEIEPDEALWGALLSACRIHGKGEVAD

Query:  RVQTRFMKQH
        RVQTRFMKQH
Subjt:  RVQTRFMKQH

SwissProt top hitse value%identityAlignment
P0C8Q2 Pentatricopeptide repeat-containing protein At4g19191, mitochondrial9.0e-5336.12Show/hide
Query:  QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRML
        ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       A  +F   T R    +  +I  ++      ++L++F  M+
Subjt:  QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRML

Query:  LSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
         SG+  D  TL  +I  C    SL  G+ +     I G   D +   NALI MY KCG +  AR +FD  PE+  V+W+ ++AGY ++G+F E   LF +
Subjt:  LSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADR
        M++   KP+ +TF A+L AC+H G +E+G EYF +M+  +++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL+AC+IH   ++A++
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADR

P93005 Pentatricopeptide repeat-containing protein At2g336803.6e-5439.58Show/hide
Query:  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLP
        +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R   L+ +LI  +       ++L ++RRM  +G   +  T+ 
Subjt:  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLP

Query:  PVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELTF
         V+K+C+ L++L LG+QVHG  + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G  DE   LFE M+ EG +PD++TF
Subjt:  PVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELTF

Query:  TALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEV
          +++ACSH G +ERG  YF MM     L P ++HY CMVDLL R GQ++EA++ I    I+    LW  LLSAC+ HGK E+
Subjt:  TALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEV

Q0WN60 Pentatricopeptide repeat-containing protein At1g184854.0e-5335.93Show/hide
Query:  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL
        +LL ACS  K+ R  K++H   IR  +    F+   + S Y  C  L     +F     +    +N +I  +       ++L +FR+M+L G  +   ++
Subjt:  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL

Query:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT
         PV  +C+ L SLRLGR+ H   + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  E   LFE M   G  PD+LT
Subjt:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT

Query:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMK
        F  +LTAC+H GLI  G  Y   M+  F L+P L+HY C++D+LGR GQ+++A +++  EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Subjt:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMK

Q9LND4 Pentatricopeptide repeat-containing protein At1g06140, mitochondrial2.5e-5536.3Show/hide
Query:  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL
        L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R   ++  LI   +      ++  +FR+ML      ++ TL
Subjt:  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL

Query:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT
          ++ SC+ L SLR G+ VHG ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F+E    F +M  +   P+ +T
Subjt:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT

Query:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK----GEVADRV
        F +LL+ACSH G ++ G + F  M   + + P  EHY CMVDLLGR G++ EA+  I  M ++P  + WGALLSACRIH +    GE+A+++
Subjt:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK----GEVADRV

Q9STF3 Pentatricopeptide repeat-containing protein At3g46790, chloroplastic4.6e-5738.46Show/hide
Query:  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKP
        Y  +L+AC     T NH    K+IHA   R G S H +I T L   YA    +  A+ +F     R    ++A+I  ++      ++L  FR M+   K 
Subjt:  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKP

Query:  IDRH--TLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEE
           +  T+  V+++C  L++L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ YGVHG   +   +FE M+  
Subjt:  IDRH--TLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEE

Query:  GQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTR
        G  P  +TF ++L ACSH GL+E GK  F  M     ++P +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LL +CRIHG  E+A+R   R
Subjt:  GQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTR

Arabidopsis top hitse value%identityAlignment
AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein1.8e-5636.3Show/hide
Query:  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL
        L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R   ++  LI   +      ++  +FR+ML      ++ TL
Subjt:  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL

Query:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT
          ++ SC+ L SLR G+ VHG ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F+E    F +M  +   P+ +T
Subjt:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT

Query:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK----GEVADRV
        F +LL+ACSH G ++ G + F  M   + + P  EHY CMVDLLGR G++ EA+  I  M ++P  + WGALLSACRIH +    GE+A+++
Subjt:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK----GEVADRV

AT1G18485.1 Pentatricopeptide repeat (PPR) superfamily protein2.9e-5435.93Show/hide
Query:  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL
        +LL ACS  K+ R  K++H   IR  +    F+   + S Y  C  L     +F     +    +N +I  +       ++L +FR+M+L G  +   ++
Subjt:  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTL

Query:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT
         PV  +C+ L SLRLGR+ H   + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  E   LFE M   G  PD+LT
Subjt:  PPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELT

Query:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMK
        F  +LTAC+H GLI  G  Y   M+  F L+P L+HY C++D+LGR GQ+++A +++  EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Subjt:  FTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMK

AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.6e-5539.58Show/hide
Query:  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLP
        +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R   L+ +LI  +       ++L ++RRM  +G   +  T+ 
Subjt:  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLP

Query:  PVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELTF
         V+K+C+ L++L LG+QVHG  + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G  DE   LFE M+ EG +PD++TF
Subjt:  PVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELTF

Query:  TALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEV
          +++ACSH G +ERG  YF MM     L P ++HY CMVDLL R GQ++EA++ I    I+    LW  LLSAC+ HGK E+
Subjt:  TALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEV

AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.3e-5838.46Show/hide
Query:  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKP
        Y  +L+AC     T NH    K+IHA   R G S H +I T L   YA    +  A+ +F     R    ++A+I  ++      ++L  FR M+   K 
Subjt:  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKP

Query:  IDRH--TLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEE
           +  T+  V+++C  L++L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ YGVHG   +   +FE M+  
Subjt:  IDRH--TLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEE

Query:  GQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTR
        G  P  +TF ++L ACSH GL+E GK  F  M     ++P +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LL +CRIHG  E+A+R   R
Subjt:  GQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTR

AT4G19191.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.4e-5436.12Show/hide
Query:  QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRML
        ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       A  +F   T R    +  +I  ++      ++L++F  M+
Subjt:  QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRML

Query:  LSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER
         SG+  D  TL  +I  C    SL  G+ +     I G   D +   NALI MY KCG +  AR +FD  PE+  V+W+ ++AGY ++G+F E   LF +
Subjt:  LSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFER

Query:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADR
        M++   KP+ +TF A+L AC+H G +E+G EYF +M+  +++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL+AC+IH   ++A++
Subjt:  MVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAACCACAAGACATAATCCCCTTCTACGCTGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACT
CGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCA
CCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCGCATGCTTCTTTCTGGAAAGCCCATTGACCGTCAT
ACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTT
GAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGG
GTTATGGTGTTCATGGGATGTTTGATGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGT
AGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGCAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGG
GAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAG
GCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAACCACAAGACATAATCCCCTTCTACGCTGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACT
CGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCA
CCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCGCATGCTTCTTTCTGGAAAGCCCATTGACCGTCAT
ACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTT
GAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGG
GTTATGGTGTTCATGGGATGTTTGATGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGT
AGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGCAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGG
GAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAG
GCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA
Protein sequenceShow/hide protein sequence
MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRH
TLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTAC
SHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMKQH