; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G003700 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003700
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTransposable element protein
Genome locationCmo_Chr13:4721726..4722346
RNA-Seq ExpressionCmoCh13G003700
SyntenyCmoCh13G003700
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0032259 - methylation (biological process)
GO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG96709.1 transposable element gene [Prunus dulcis]5.3e-3469.44Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA HL NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSP
        ++VWSG P
Subjt:  LDVWSGSP
BBH09562.1 transposable element gene [Prunus dulcis]5.3e-3469.44Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA HL NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSP
        ++VWSG P
Subjt:  LDVWSGSP
BBN69252.1 hypothetical protein Prudu_848S000100 [Prunus dulcis]4.0e-3468.18Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA HL NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSPKI
        ++VWSG P +
Subjt:  LDVWSGSPKI
BBN69488.1 transposable element gene [Prunus dulcis]5.3e-3469.44Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA HL NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSP
        ++VWSG P
Subjt:  LDVWSGSP
GFZ19218.1 hypothetical protein Acr_27g0009570 [Actinidia rufa]3.3e-3672.22Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M ENQT RKIKKLRSDNGGEY YD FLK+C++EGIVRHFTV   PQQNGVAERMN+TL+ KVR +LS  GLSKAF AEA+SYA HL NRLP +  GG+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSP
        ++VWSG P
Subjt:  LDVWSGSP
TrEMBL top hitse value%identityAlignment
A0A4Y1QXX8 Transposable element protein2.5e-3469.44Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA HL NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSP
        ++VWSG P
Subjt:  LDVWSGSP
A0A5B7BZJ7 Putative copia LTR rider8.8e-3569.16Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E QT RKI++LRSDNGGEY  D F  +CRDEGIVRHFTV G PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA H+ NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGS
        L+VWSGS
Subjt:  LDVWSGS
A0A5B7C042 Putative Ty-1 copia retrotransposon (Fragment)5.1e-3570.09Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E QT RKI++LRSDNGGEY  D F  +CRDEGIVRHFTV G PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA HL NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGS
        L+VWSGS
Subjt:  LDVWSGS
A0A5H2XQM4 Integrase catalytic domain-containing protein2.0e-3468.18Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M E Q+ RKIK LRSDNGGEY  D FLKVC+DEGIVRHFTV   PQQNGVAERMN+TL+EKVR +LS  GL KAF AEA++YA HL NRLP + N G+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSPKI
        ++VWSG P +
Subjt:  LDVWSGSPKI
A0A7J0H864 Integrase catalytic domain-containing protein1.6e-3672.22Show/hide
Query:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS
        M ENQT RKIKKLRSDNGGEY YD FLK+C++EGIVRHFTV   PQQNGVAERMN+TL+ KVR +LS  GLSKAF AEA+SYA HL NRLP +  GG+T 
Subjt:  MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTS

Query:  LDVWSGSP
        ++VWSG P
Subjt:  LDVWSGSP
SwissProt top hitse value%identityAlignment
P04146 Copia protein9.1e-1339.8Show/hide
Query:  KIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSR--NGGRTSLDVW
        K+  L  DNG EY  +   + C  +GI  H TVP  PQ NGV+ERM +T+ EK R ++S   L K+F  EA+  A +L NR+P     +  +T  ++W
Subjt:  KIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSR--NGGRTSLDVW
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-2055.06Show/hide
Query:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLP
        E +T RK+K+LRSDNGGEYT   F + C   GI    TVPG PQ NGVAERMN+T++EKVR +L    L K+F  EA+  A +L NR P
Subjt:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLP
P25384 Transposon Ty2-C Gag-Pol polyprotein1.7e-0628.69Show/hide
Query:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------
        +NQ + ++  ++ D G EYT  +  K   + GI   +T     + +GVAER+N+TL+   R +L   GL       A+ ++  + N L   +N       
Subjt:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------

Query:  GGRTSLDVWS----GSPKIENN
         G   LD+ +    G P I NN
Subjt:  GGRTSLDVWS----GSPKIENN
Q12491 Transposon Ty2-B Gag-Pol polyprotein1.7e-0628.69Show/hide
Query:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------
        +NQ + ++  ++ D G EYT  +  K   + GI   +T     + +GVAER+N+TL+   R +L   GL       A+ ++  + N L   +N       
Subjt:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------

Query:  GGRTSLDVWS----GSPKIENN
         G   LD+ +    G P I NN
Subjt:  GGRTSLDVWS----GSPKIENN
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.3e-0736.67Show/hide
Query:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFT-VPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLP
        EN+   +I  L SDNGGE+     L+    +  + HFT  P  P+ NG++ER ++ ++E    +LS   + K +   A S AV+L NRLP
Subjt:  ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFT-VPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLP
Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.9e-0543.14Show/hide
Query:  MNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVW
        MN+T+IEKVR +L + GL K F A+A + AVH+ N+ P +        +VW
Subjt:  MNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCG
ACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGG
CATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTAAAATT
GAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCG
ACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGG
CATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTAAAATT
GAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG
Protein sequenceShow/hide protein sequence
MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSPKI
ENNDEALKQVEKVVFSPDMVAPIEEPID