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CmoCh13G004060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G004060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr13:5147273..5149907
RNA-Seq ExpressionCmoCh13G004060
SyntenyCmoCh13G004060
Gene Ontology termsGO:0009157 - deoxyribonucleoside monophosphate biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0004797 - thymidine kinase activity (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035652.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.4e-1683.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

XP_004139614.1 pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Cucumis sativus]1.4e-1683.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

XP_008463614.1 PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucumis melo]1.4e-1683.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

XP_031745945.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucumis sativus]1.4e-1683.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

XP_038894135.1 pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Benincasa hispida]2.7e-1786.79Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKITYNGLIK FC AGN EKGLELYEQMIM+GLS DTISCNIL N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

TrEMBL top hitse value%identityAlignment
A0A1S3CJN8 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like6.5e-1783.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

A0A5A7SWK3 Pentatricopeptide repeat-containing protein6.5e-1783.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

A0A6J1CMC3 pentatricopeptide repeat-containing protein At5g64320, mitochondrial2.3e-1475.47Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGCT+DKI+YNGLIK FC  GN EKGL L+EQM M+GL  DTISCNIL N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

A0A6J1EBE2 pentatricopeptide repeat-containing protein At5g64320, mitochondrial1.5e-1683.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLFRGC +DKITYNGLIK FC AGN EKGLELYE+MIM+GL+ADTISCNIL N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

A0A6J1HNL7 pentatricopeptide repeat-containing protein At5g64320, mitochondrial1.5e-1683.02Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        MLF+GC +DKITYNGLIK FC AGN EKGLELYE+MIM+GLSADTISCNIL N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

SwissProt top hitse value%identityAlignment
Q9FMF6 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial7.0e-0849.06Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        M+F+G  +D+ITYN LIK  C AG  +K   L+E+M+ +G +   ISCNIL N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN

Q9LPX2 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial2.1e-0439.22Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        M+ +GC  D +T+N LI  +C A   + GLEL+ +M + G+ A+T++ N L
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

Q9LQ14 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic1.2e-0441.18Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        M+ + C  + +TYN LIK FC A   E+G+EL+ +M   GL  +T++ N L
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

Q9SH60 Pentatricopeptide repeat-containing protein At1g641001.2e-0443.75Show/hide
Query:  RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        RG   +  TYN LI  FC   N     +L+++MI +G+  DTI+CNIL
Subjt:  RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

Q9SXD1 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial1.6e-0441.18Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        M+ + C  D +TYN LIK FC     E+G+E++ +M   GL  +T++ NIL
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

Arabidopsis top hitse value%identityAlignment
AT1G62670.1 rna processing factor 21.1e-0541.18Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        M+ + C  D +TYN LIK FC     E+G+E++ +M   GL  +T++ NIL
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-0641.18Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        M+ + C  + +TYN LIK FC A   E+G+EL+ +M   GL  +T++ N L
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

AT1G64100.1 pentatricopeptide (PPR) repeat-containing protein8.8e-0643.75Show/hide
Query:  RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        RG   +  TYN LI  FC   N     +L+++MI +G+  DTI+CNIL
Subjt:  RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

AT1G64100.2 pentatricopeptide (PPR) repeat-containing protein8.8e-0643.75Show/hide
Query:  RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL
        RG   +  TYN LI  FC   N     +L+++MI +G+  DTI+CNIL
Subjt:  RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL

AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein5.0e-0949.06Show/hide
Query:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN
        M+F+G  +D+ITYN LIK  C AG  +K   L+E+M+ +G +   ISCNIL N
Subjt:  MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTCAGAGGATGCACCATTGATAAGATTACTTACAATGGTCTGATAAAAGTATTTTGCAATGCTGGAAATGATGAAAAAGGATTGGAGTTATATGAACAAATGAT
AATGAATGGGCTTAGTGCTGATACTATATCGTGTAATATTCTGAACAACAGGGTCGCTAACGCGGATTGGCACAAGATTACATTCTATTGCCCTTGTTTTTGCTTCTCTC
TTCATCAGCTATTAGCTTCAGAACATAGGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTCAGAGGATGCACCATTGATAAGATTACTTACAATGGTCTGATAAAAGTATTTTGCAATGCTGGAAATGATGAAAAAGGATTGGAGTTATATGAACAAATGAT
AATGAATGGGCTTAGTGCTGATACTATATCGTGTAATATTCTGAACAACAGGGTCGCTAACGCGGATTGGCACAAGATTACATTCTATTGCCCTTGTTTTTGCTTCTCTC
TTCATCAGCTATTAGCTTCAGAACATAGGCAATAG
Protein sequenceShow/hide protein sequence
MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNNRVANADWHKITFYCPCFCFSLHQLLASEHRQ