CuGenDBv2

Gene ID	CmoCh13G004100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	FAS1 domain-containing protein SELMODRAFT_448915-like
Genome location	Cmo_Chr13:5162329..5164260
RNA-Seq Expression	CmoCh13G004100
Synteny	CmoCh13G004100
Gene Ontology terms	NA
InterPro domains	IPR000782 - FAS1 domain IPR036378 - FAS1 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583741.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-69

100

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Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDK
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDK
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDK

XP_022927494.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita moschata]

2.1e-77

100

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Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN

XP_023001077.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita maxima]

1.4e-78

97.4

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Query:  VISAVPTMSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSG
        VISAVPTMSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTD LESFVLSHSIVMPLQFSDLIRFPTGSIVPSG
Subjt:  VISAVPTMSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSG

Query:  YRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN
        YRNRMIRIHNHGRGHFLVNNAAVT+PNVCSSS GIKCHGIDKV+DYGNAYDNHN
Subjt:  YRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN

XP_023520235.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita pepo subsp. pepo]

3.0e-76

98.65

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Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNL+AAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISI TDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN

XP_038893487.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Benincasa hispida]

3.9e-60

77.71

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Query:  VISAVPTM-SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPS
        + SAVP + SQ  NHT+L AA+ DM+A+SFYGFAILLQMLN TTQLTL++ITFFIP DPQLSNISI  DRLE+FVLSH IVMPL+FSDLIRFPTGSIVPS
Subjt:  VISAVPTM-SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPS

Query:  GYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYG-NAYDNHNN
        GY NRMIRIHNHGRGHF+VNNA V VPNVCSSSE IKCHG++KV+DYG ++Y N NN
Subjt:  GYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYG-NAYDNHNN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTE3 Uncharacterized protein

1.3e-45

78.99

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Query:  MLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKC
        MLN TTQLTL++ITFFIP DPQ+SNISI  DRLE+FVLSH I+MPLQFSDLIRFPTGSIVPSGY NRMIRIHN+GRGHF+VNNA V VPNVCSSS GIKC
Subjt:  MLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKC

Query:  HGIDKVLDYGNA-YDNHNN
        HG++KV++YG A Y N +N
Subjt:  HGIDKVLDYGNA-YDNHNN

A0A1S3CJM9 FAS1 domain-containing protein SELMODRAFT_448915-like

3.7e-56

77.7

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Query:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI
        SQT N T+L AA+ DM+AQSFYGFAILLQMLN TTQLTL++ITFFIP D QLSNISI  + LE+FVLSH IVMPLQFSDLIRFPTGSIVPSGY NRMIRI
Subjt:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI

Query:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGN-AYDNHNN
        HN+GRGHF+VNNA V VPNVCSSS GIKCHG++KV++YG   Y N NN
Subjt:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGN-AYDNHNN

A0A6J1CM20 uncharacterized protein LOC111012702

1.6e-51

74.47

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Query:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI
        S   N T+L AA+ DMRA+SFYGFAILLQMLNATTQL LRDITFFIP D QLSNISI   RLE+FV SH I MPLQFSDLIRFPTGS+VPSG  NRMIR+
Subjt:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI

Query:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA
        HNHGR HFLVNNA VTVPNVC ++  +KCHG+++V+DYG+A
Subjt:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA

A0A6J1EI57 FAS1 domain-containing protein SELMODRAFT_448915-like

1.0e-77

100

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Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN

A0A6J1KFG1 FAS1 domain-containing protein SELMODRAFT_448915-like

6.9e-79

97.4

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Query:  VISAVPTMSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSG
        VISAVPTMSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTD LESFVLSHSIVMPLQFSDLIRFPTGSIVPSG
Subjt:  VISAVPTMSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSG

Query:  YRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN
        YRNRMIRIHNHGRGHFLVNNAAVT+PNVCSSS GIKCHGIDKV+DYGNAYDNHN
Subjt:  YRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN

SwissProt top hits

e value

%identity

Alignment

P0DH64 FAS1 domain-containing protein SELMODRAFT_448915

5.6e-09

29.77

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Query:  VGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNI--SIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLV
        V +M  Q F   A + Q L   T + +R  T  IP +  ++ +  ++  + + + +  H +  P  F  L R   G+ +P+  +  MI + ++  G+F +
Subjt:  VGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNI--SIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLV

Query:  NNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA
        N   +T P+VCSS+  I CHGID+VL Y ++
Subjt:  NNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA

Arabidopsis top hits

e value

%identity

Alignment

AT5G16920.1 Fasciclin-like arabinogalactan family protein

5.2e-18

35.92

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Query:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQL--SNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHN
        N+  L  A+ +M   +++ F +L+ ML +     L ++TF +P D  L  SNI    D +  F+L HSI   L F  L   P GSIVPS   +  + I N
Subjt:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQL--SNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHN

Query:  HGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDN
         GR ++ +NN  +   N+CS    IKCHGID +L   +  D+
Subjt:  HGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDN

AT5G26730.1 Fasciclin-like arabinogalactan family protein

5.7e-25

40.58

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Query:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHG
        N T+L++A+ DMR QS+ GF ILL+ LN T      DITF +P D  +S+  I  + LE+F+L H+I   L  + ++ FP  ++VP  + +RM  I   G
Subjt:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHG

Query:  RGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAY
             VNNA +  PNVC +S  I CHGI  V+ +   Y
Subjt:  RGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAY

Sequences

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CDS sequence

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ATGGCGGTGGTAGAGGGGCAGCCAATGCGTGTCATTTCAGCTGTCCCGACAATGTCCCAAACCTTAAACCACACGAATCTCCTAGCTGCCGTTGGAGACATGAGGGCCCA
ATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACGCCACCACCCAACTGACCCTAAGAGACATCACCTTCTTCATCCCCCTCGACCCTCAGCTCTCGAACATCT
CCATACCGACCGACCGTCTCGAGTCGTTCGTCCTCAGCCATTCGATTGTCATGCCGCTGCAATTCAGTGATTTGATTCGATTTCCCACTGGCTCCATCGTTCCTTCGGGT
TATCGTAATAGGATGATCAGAATCCATAACCATGGAAGAGGCCATTTTCTTGTCAATAATGCTGCTGTCACTGTTCCTAATGTTTGTTCTAGTTCCGAGGGTATTAAGTG
TCATGGGATTGATAAGGTCCTTGATTATGGTAATGCTTACGATAATCATAATAATTAA

mRNA sequence

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Protein sequence

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MAVVEGQPMRVISAVPTMSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSG
YRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN

CmoCh13G004100 (gene) of Cucurbita moschata (Rifu) v1 genome