CuGenDBv2

Gene ID	CmoCh13G004230
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Genome location	Cmo_Chr13:5266262..5266686
RNA-Seq Expression	CmoCh13G004230
Synteny	CmoCh13G004230
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR044517 - Protein PHOX1-4

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573480.1 Protein CLMP1, partial [Cucurbita argyrosperma subsp. sororia]

9.1e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG+SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ D+VGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

KAG7012619.1 Protein CLMP1, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.1e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG+SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ D+VGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

XP_022954875.1 protein CLMP1-like [Cucurbita moschata]

9.1e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG+SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ D+VGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

XP_022994229.1 protein CLMP1-like [Cucurbita maxima]

9.1e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG+SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ D+VGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

XP_023523810.1 protein CLMP1-like [Cucurbita pepo subsp. pepo]

9.1e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG+SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ D+VGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CMY2 protein CLMP1

1.1e-37

69.77

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GN RF++ D+VGALEQYE    L PK            AACLMQ KPID+D  
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP+FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

A0A6J1EHE4 protein CLMP1-like

8.3e-38

69.77

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSG RKKKG SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ DFVGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAEC M LQ+QP+FVRALL RARA EAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

A0A6J1GTM2 protein CLMP1-like

4.4e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG+SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ D+VGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

A0A6J1K2B6 protein CLMP1-like

4.4e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG+SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ D+VGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP FVRALL RARAFEAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

A0A6J1KIW9 protein CLMP1-like

5.7e-39

71.32

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Query:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA
        +GKSGTRKKKG SNHA S VNSTPNAN GVDLDSSI LKRAHE +E+GNKRF++ DFVGALEQYE    L PK            AACLMQ+KPID+DT 
Subjt:  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTA

Query:  IAECTMDLQLQPQFVRALLWRARAFEAIG
        IAECTM LQ+QP+FVRALL RARA EAIG
Subjt:  IAECTMDLQLQPQFVRALLWRARAFEAIG

SwissProt top hits

e value

%identity

Alignment

F4IRM4 Protein PHOX1

3.7e-11

36.54

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Query:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA
        +A +  D D +I + RA E +E+GNK F+  D+ GA+ +Y+    LLP+           +A+C MQ+   ++  AI EC + L+  P+F +ALL RAR 
Subjt:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA

Query:  FEAI
        +EA+
Subjt:  FEAI

F4JTI1 Protein PHOX4

1.6e-09

31.5

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Query:  GKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTL------IELAACLMQLKPIDHDTAI
        G  G   K G + H         + +R  D D  I + RA E +E+GNK F+  D  GA+  ++    LLPK  +        +A+C MQ+   ++  AI
Subjt:  GKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTL------IELAACLMQLKPIDHDTAI

Query:  AECTMDLQLQPQFVRALLWRARAFEAI
        +EC + L+  P++ +AL+ R+R +EA+
Subjt:  AECTMDLQLQPQFVRALLWRARAFEAI

F4K487 Protein PHOX3

6.6e-08

36.26

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Query:  LKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTL------IELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARAFEAI
        + +A   +E+GNK F+  D+ GA+ +Y     +LPK  +        +A+C MQL+P +   AI EC + L + P   +ALL RAR +EA+
Subjt:  LKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTL------IELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARAFEAI

O48802 Protein CLMP1

4.0e-29

53.96

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Query:  LGKSGTRKKK-GSSNHACSDVNSTPNA---------NRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLM
        +GKSG RKKK G SN   S VNS+  +         N GVD D+SI LKRAHE +E+GNK+F++ D+VGALEQYE    L+PK            AACLM
Subjt:  LGKSGTRKKK-GSSNHACSDVNSTPNA---------NRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLM

Query:  QLKPIDHDTAIAECTMDLQLQPQFVRALLWRARAFEAIG
        Q+KPID+++ I+EC+M L+ QP F RALL RARAFEA+G
Subjt:  QLKPIDHDTAIAECTMDLQLQPQFVRALLWRARAFEAIG

Arabidopsis top hits

e value

%identity

Alignment

AT1G62390.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

2.8e-30

53.96

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Query:  LGKSGTRKKK-GSSNHACSDVNSTPNA---------NRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLM
        +GKSG RKKK G SN   S VNS+  +         N GVD D+SI LKRAHE +E+GNK+F++ D+VGALEQYE    L+PK            AACLM
Subjt:  LGKSGTRKKK-GSSNHACSDVNSTPNA---------NRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLM

Query:  QLKPIDHDTAIAECTMDLQLQPQFVRALLWRARAFEAIG
        Q+KPID+++ I+EC+M L+ QP F RALL RARAFEA+G
Subjt:  QLKPIDHDTAIAECTMDLQLQPQFVRALLWRARAFEAIG

AT2G25290.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

2.7e-12

36.54

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Query:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA
        +A +  D D +I + RA E +E+GNK F+  D+ GA+ +Y+    LLP+           +A+C MQ+   ++  AI EC + L+  P+F +ALL RAR 
Subjt:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA

Query:  FEAI
        +EA+
Subjt:  FEAI

AT2G25290.2 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

2.7e-12

36.54

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Query:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA
        +A +  D D +I + RA E +E+GNK F+  D+ GA+ +Y+    LLP+           +A+C MQ+   ++  AI EC + L+  P+F +ALL RAR 
Subjt:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA

Query:  FEAI
        +EA+
Subjt:  FEAI

AT2G25290.3 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

2.7e-12

36.54

Show/hide

Query:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA
        +A +  D D +I + RA E +E+GNK F+  D+ GA+ +Y+    LLP+           +A+C MQ+   ++  AI EC + L+  P+F +ALL RAR 
Subjt:  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARA

Query:  FEAI
        +EA+
Subjt:  FEAI

AT4G32070.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

1.1e-10

31.5

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Query:  GKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTL------IELAACLMQLKPIDHDTAI
        G  G   K G + H         + +R  D D  I + RA E +E+GNK F+  D  GA+  ++    LLPK  +        +A+C MQ+   ++  AI
Subjt:  GKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTL------IELAACLMQLKPIDHDTAI

Query:  AECTMDLQLQPQFVRALLWRARAFEAI
        +EC + L+  P++ +AL+ R+R +EA+
Subjt:  AECTMDLQLQPQFVRALLWRARAFEAI

Sequences

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CDS sequence

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TGGAAAAGGGGGTTGCATTTTCGCTTTATCTGTTTGGGGAAATCTGGGACTCGAAAAAAGAAGGGTAGTTCGAATCATGCTTGTTCGGATGTTAATTCGACTCCAAATGC
TAATAGGGGTGTTGATTTGGATTCTTCTATCGTTTTGAAAAGAGCCCATGAGTTTGAAGAAGATGGGAATAAAAGGTTCCGGAGTTATGATTTTGTTGGTGCTCTTGAGC
AGTATGAAATGCACTTCGTCTTACTCCCAAAACCCACCCTGATCGAGCTAGCGGCTTGTTTGATGCAATTGAAACCAATTGATCATGATACTGCTATTGCTGAGTGTACC
ATGGACCTCCAGCTCCAGCCCCAATTTGTTCGTGCTCTCCTTTGGAGGGCTCGTGCTTTTGAGGCCATTGGGAATTGA

mRNA sequence

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Protein sequence

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WKRGLHFRFICLGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTLIELAACLMQLKPIDHDTAIAECT
MDLQLQPQFVRALLWRARAFEAIGN

CmoCh13G004230 (gene) of Cucurbita moschata (Rifu) v1 genome