CuGenDBv2

Gene ID	CmoCh13G004630
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ribonuclease H2 subunit C
Genome location	Cmo_Chr13:5676979..5680200
RNA-Seq Expression	CmoCh13G004630
Synteny	CmoCh13G004630
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-88

99.4

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

KAG7019419.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.3e-86

98.19

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE ERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTG  VDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

6.9e-89

100

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

2.3e-84

96.39

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSV+NAYFRGRKLQGATISLPEGY GYVIGRKS  KRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLA AS ALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

XP_023519278.1 uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]

7.1e-86

96.99

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSE ERKREVIVDFDFGSDSG VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTF RSFHWLTVAQALHKP TAEDLAAAS ALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9A8 uncharacterized protein C12B10.15c

4.5e-70

77.98

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Query:  MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK
        M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K
Subjt:  MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK

Query:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Subjt:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

4.5e-70

77.98

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Query:  MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK
        M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K
Subjt:  MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRK

Query:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        +S++  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Subjt:  ASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A6J1CLH6 ribonuclease H2 subunit C

2.0e-70

81.93

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MD+E ER+REVIVD D G DS AVDLSGKVHQLPC VK DGPCSVS YFKPK TGIEVDGLSVE AYFRGRKLQGATISLPEGYSG+V+GRK  GKRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        E+SQD  SW+VKAKF NITYWNH TLP+QDD F+RSFHWLTVAQALH+PVTAEDLA+AS A K+MS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c

3.3e-89

100

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c

1.1e-84

96.39

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Query:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS
        MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSV+NAYFRGRKLQGATISLPEGY GYVIGRKS  KRKAS
Subjt:  MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKAS

Query:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS
        EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLA AS ALKNMS
Subjt:  EESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

9.6e-09

31.4

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Query:  KVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGKRKASEESQDSSSWQVKAKFENITYWNHD
        K   LPC + +DGP  V +YF  K   I  +  S      RGR+L G  + LPE Y+G V+    G ++    + SE+    S+W + + FE +  WN D
Subjt:  KVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGKRKASEESQDSSSWQVKAKFENITYWNHD

Query:  TL-PTQDDTFQRS-FHWLTVA
         +  ++ D ++R    W+  A
Subjt:  TL-PTQDDTFQRS-FHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

4.7e-08

30.66

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Query:  VHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGK----RKASEESQDSSSWQ--------VKA
        +H LPC V  DGP  V ++F P +     +GL V    FRGR L+G  +++P G  GYV+     + S GK    R +  + Q+    +          A
Subjt:  VHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVI----GRKSHGK----RKASEESQDSSSWQ--------VKA

Query:  KFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPV
         F   T W  +T+P  D   + +  W ++A A+H  V
Subjt:  KFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.5e-52

60.51

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Query:  VDFDFGSDSGA-VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKS----HGKRKASEESQDSS
        +DF   +D  + VDLS +VHQLPC ++FDGP  VS YFKPKS+ +E+DG+  E A+FRGRKLQGATISLP GYSG+V+ + S    +GKRKAS  ++D+ 
Subjt:  VDFDFGSDSGA-VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKS----HGKRKASEESQDSS

Query:  SWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKN
         W+VKAKF N+TYWNHD+LP++DDTF RSFHW ++A+ALHKPV  EDL A S   KN
Subjt:  SWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKN

Sequences

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CDS sequence

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ATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGT
TAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTATTGAGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGC
AGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAA
GTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACGGTTGCACAAGCATTGCA
CAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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GCGGGAAAATCTTGGTCACTAATCGATTCTTAGGGCTCAAAAAAGCGGGAAGAAATGGTCAGTTGAATTTCCTCTCTCGAAATCCGAAGCATCGACGTGGGTTTAAGGTT
TTTGAATTTAGGGTTTCTTCACAATTGATCAAATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTC
AGCGGTAAAGTCCATCAGCTTCCGTGTGCCGTTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTATTGAGGTTGATGGTTTGAGCGT
TGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTT
CCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCT
TTTCACTGGCTGACGGTTGCACAAGCATTGCACAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGATCAAGAAGATCATGTGC
TCTAACACTAAGGTAGTATGAAATGATTCCGCGCCACTTCTATTTGTATTTGGTCACATTATTATCTATATTACCTATTTATTTAATGGGTTTGGCATGATCATGATCTG
GCTGAAACTTGACGATGCTGTTAGAAATATATGATCATTAAAAATTTCAATTATATAGAATAAATAATCCAATTGAGCA

Protein sequence

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MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQ
VKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS

CmoCh13G004630 (gene) of Cucurbita moschata (Rifu) v1 genome