; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G005530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G005530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein B
Genome locationCmo_Chr13:6368176..6368490
RNA-Seq ExpressionCmoCh13G005530
SyntenyCmoCh13G005530
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]3.7e-4893.27Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]4.2e-52100Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

XP_023001494.1 uncharacterized protein LOC111495614 [Cucurbita maxima]8.8e-5097.12Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQVG NVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]6.1e-5199.04Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]1.1e-4792.31Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQ G NVESNP+SLDRVGKVR+LLFRRMLIGIKDGRFFLGSFYC+DKQGNIILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein1.8e-4893.27Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

A0A1S3BAH4 uncharacterized protein LOC1034877841.3e-4691.35Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 21.3e-4691.35Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

A0A6J1EKG3 uncharacterized protein LOC1114341492.0e-52100Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

A0A6J1KMW6 uncharacterized protein LOC1114956144.3e-5097.12Show/hide
Query:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
        MVQVG NVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA
Subjt:  MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLA

Query:  LLSV
        LLSV
Subjt:  LLSV

SwissProt top hitse value%identityAlignment
A4IGZ4 N-alpha-acetyltransferase 38, NatC auxiliary subunit1.2e-0637.5Show/hide
Query:  GCNVESNP---DSLDRVG-----KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        GC+ +S+P   DS    G     K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  GCNVESNP---DSLDRVG-----KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

P63162 Small nuclear ribonucleoprotein-associated protein N3.1e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q17QN3 Small nuclear ribonucleoprotein-associated protein N3.1e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B3.6e-0632.95Show/hide
Query:  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q6GQ67 N-alpha-acetyltransferase 38-A, NatC auxiliary subunit1.2e-0635.42Show/hide
Query:  GCNVESNPDSLDRVG--------KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        GC+ +S+P + D           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  GCNVESNPDSLDRVG--------KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein3.1e-3771.58Show/hide
Query:  SNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
        S     D + ++RKLLFR+ML+GIKDGRFFLG+F+C+DKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Subjt:  SNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

AT4G20440.2 small nuclear ribonucleoprotein associated protein B1.2e-0427.38Show/hide
Query:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD

AT4G20440.3 small nuclear ribonucleoprotein associated protein B1.2e-0427.38Show/hide
Query:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD

AT5G44500.1 Small nuclear ribonucleoprotein family protein1.9e-0528.24Show/hide
Query:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYR------STRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R        ++++    E+R LGL+L+     +S  V+
Subjt:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYR------STRRSSPSPMEQRCLGLILIPNSCRVSCHVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAGGTTGGTTGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAG
GTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAAC
GGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAGGTTGGTTGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAG
GTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAAC
GGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG
Protein sequenceShow/hide protein sequence
MVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV