; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G005740 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G005740
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationCmo_Chr13:6478189..6479295
RNA-Seq ExpressionCmoCh13G005740
SyntenyCmoCh13G005740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583907.1 hypothetical protein SDJN03_19839, partial [Cucurbita argyrosperma subsp. sororia]3.6e-12395.78Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
        MGEKMPPPPPP  PSISLHSSFFSSLKQVEKRLKLD+PSQRDALRPPSPRRA SLPVEI SSSS EESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS

Query:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
        SDLKSESNSPNLIDCG NRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWI Y W GGGEAERLEPLRLA
Subjt:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA

Query:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
Subjt:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

KAG7019524.1 hypothetical protein SDJN02_18485 [Cucurbita argyrosperma subsp. argyrosperma]4.1e-12798.31Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
        MGEKMPPPPPP  PSISLHSSFFSSLKQVEKRLK DNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS

Query:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
        SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWI YFWTGGGEAERLEPLRLA
Subjt:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA

Query:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
Subjt:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

XP_022927255.1 uncharacterized protein LOC111434155 [Cucurbita moschata]4.7e-131100Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
        MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS

Query:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
        SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
Subjt:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA

Query:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
Subjt:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

XP_023001462.1 uncharacterized protein LOC111495590 [Cucurbita maxima]7.7e-12696.62Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
        MGEKMPPPPPPP PSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHL QTNT SSLQESSEPPPEFLSNS
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS

Query:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
        SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLG GDSFEE+ELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWI YFWTGGGEAERLEPLRLA
Subjt:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA

Query:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        YLLMGKAVFASNG D+CLEGLEFPSTVEDFLLNDPPA
Subjt:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

XP_023519908.1 uncharacterized protein LOC111783234 [Cucurbita pepo subsp. pepo]3.6e-12394.56Show/hide
Query:  MGEKM--PPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLS
        MGEKM  PPPPPPP PSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSS EES+STPMYLHLPQTNT SSLQESSEPPPEFLS
Subjt:  MGEKM--PPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLS

Query:  NSSDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLR
        NSSDLKSESNSPNLIDCGQ+RPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKE ERLNGWI Y W GGGEAERLEPLR
Subjt:  NSSDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLR

Query:  LAYLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        LAYLLMGKAVFASNG D+CLEGLEFPSTVEDFLLNDPPA
Subjt:  LAYLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

TrEMBL top hitse value%identityAlignment
A0A0A0LUG6 Uncharacterized protein3.4e-8773.93Show/hide
Query:  PPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNSSDL-----
        P P  P +SLHS+FFSSLKQVEKRLKLD+ SQRD L PP     P LPV  +SSS+ E+SLSTPMYLH PQTNT+S+LQESS+ P EFLS+SS       
Subjt:  PPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNSSDL-----

Query:  KSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLAYLL
        KSESN P  ID GQNR VDDIQRL+QLLGL DS +E+E GA++GCNGCEGCESGFYSKIVGLKGPKC KEVERLNGWI +F  GG E +RLEPLRLAYLL
Subjt:  KSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLAYLL

Query:  MGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        +GKAVFASN  D CLEGLEFPSTVEDFLLNDPPA
Subjt:  MGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

A0A1S3B9V1 uncharacterized protein LOC1034875962.7e-9275.31Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEES-LSTPMYLHLPQTNTTSSLQESSEPPPEFLSN
        MGEKM PPPPPP P +SLHS FFSSLKQVEKRLKLD+ SQRD L PP     P +PV+ ++SSS EE  LSTPMYLH PQTNT+S+LQESS+PP EFLSN
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEES-LSTPMYLHLPQTNTTSSLQESSEPPPEFLSN

Query:  -----SSDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERL
              S  KS SN PNLID GQNR +DDIQRL+QLLGL DS +E+ELG + GCNGCEGCESGFYSKIVGLKGPKC KEVERLNGWI +F  GGGE +RL
Subjt:  -----SSDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERL

Query:  EPLRLAYLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        EPLRLAYLL+GKAVFASNG D CL+GLEFPSTVEDFLLNDPPA
Subjt:  EPLRLAYLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

A0A5A7UHE6 Uncharacterized protein2.7e-9275.31Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEES-LSTPMYLHLPQTNTTSSLQESSEPPPEFLSN
        MGEKM PPPPPP P +SLHS FFSSLKQVEKRLKLD+ SQRD L PP     P +PV+ ++SSS EE  LSTPMYLH PQTNT+S+LQESS+PP EFLSN
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEES-LSTPMYLHLPQTNTTSSLQESSEPPPEFLSN

Query:  -----SSDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERL
              S  KS SN PNLID GQNR +DDIQRL+QLLGL DS +E+ELG + GCNGCEGCESGFYSKIVGLKGPKC KEVERLNGWI +F  GGGE +RL
Subjt:  -----SSDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERL

Query:  EPLRLAYLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        EPLRLAYLL+GKAVFASNG D CL+GLEFPSTVEDFLLNDPPA
Subjt:  EPLRLAYLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

A0A6J1END4 uncharacterized protein LOC1114341552.3e-131100Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
        MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS

Query:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
        SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
Subjt:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA

Query:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
Subjt:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

A0A6J1KGL6 uncharacterized protein LOC1114955903.7e-12696.62Show/hide
Query:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS
        MGEKMPPPPPPP PSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHL QTNT SSLQESSEPPPEFLSNS
Subjt:  MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNS

Query:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA
        SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLG GDSFEE+ELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWI YFWTGGGEAERLEPLRLA
Subjt:  SDLKSESNSPNLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLA

Query:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA
        YLLMGKAVFASNG D+CLEGLEFPSTVEDFLLNDPPA
Subjt:  YLLMGKAVFASNGSDHCLEGLEFPSTVEDFLLNDPPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAAAAATGCCGCCACCGCCACCGCCACCGGCGCCGTCTATATCTCTGCACTCCAGTTTCTTTTCGTCTCTTAAGCAGGTCGAAAAACGCCTTAAATTAGACAA
TCCATCGCAACGGGACGCTCTTCGTCCACCATCGCCACGAAGAGCACCGTCATTGCCAGTAGAAATCAGTTCTTCTTCATCGGTCGAAGAGTCCCTGAGCACTCCCATGT
ACCTTCATTTGCCCCAAACCAACACAACCTCCTCCTTACAAGAAAGCAGCGAACCGCCTCCCGAATTCCTCTCGAATTCCTCAGATCTGAAATCAGAATCGAATAGCCCG
AATCTCATCGATTGTGGCCAAAACCGGCCTGTAGATGACATTCAACGGCTGGTTCAACTTCTAGGGTTAGGGGATTCGTTTGAAGAACAGGAATTGGGTGCTCGGAGTGG
TTGTAATGGCTGTGAGGGTTGTGAAAGCGGGTTTTACAGTAAGATCGTTGGCCTAAAAGGCCCCAAATGTGGAAAGGAGGTGGAGAGGCTAAATGGATGGATTCACTACT
TCTGGACTGGTGGCGGTGAAGCAGAGAGATTAGAGCCTCTTAGATTGGCGTATTTACTGATGGGGAAGGCTGTTTTTGCTTCTAATGGCAGCGATCATTGTTTGGAAGGA
TTGGAATTCCCTTCAACTGTAGAGGATTTCTTGCTGAATGATCCTCCTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATATGTGCGCGCTGCGCGCGAAATTTGGCACCAAATTTTTGTTCGACAGCTTTGCCTCTCGTCGTGTGTATTGGCCATCCGAGAAATTGCCGCAGCTTCATGGGTGAAAA
AATGCCGCCACCGCCACCGCCACCGGCGCCGTCTATATCTCTGCACTCCAGTTTCTTTTCGTCTCTTAAGCAGGTCGAAAAACGCCTTAAATTAGACAATCCATCGCAAC
GGGACGCTCTTCGTCCACCATCGCCACGAAGAGCACCGTCATTGCCAGTAGAAATCAGTTCTTCTTCATCGGTCGAAGAGTCCCTGAGCACTCCCATGTACCTTCATTTG
CCCCAAACCAACACAACCTCCTCCTTACAAGAAAGCAGCGAACCGCCTCCCGAATTCCTCTCGAATTCCTCAGATCTGAAATCAGAATCGAATAGCCCGAATCTCATCGA
TTGTGGCCAAAACCGGCCTGTAGATGACATTCAACGGCTGGTTCAACTTCTAGGGTTAGGGGATTCGTTTGAAGAACAGGAATTGGGTGCTCGGAGTGGTTGTAATGGCT
GTGAGGGTTGTGAAAGCGGGTTTTACAGTAAGATCGTTGGCCTAAAAGGCCCCAAATGTGGAAAGGAGGTGGAGAGGCTAAATGGATGGATTCACTACTTCTGGACTGGT
GGCGGTGAAGCAGAGAGATTAGAGCCTCTTAGATTGGCGTATTTACTGATGGGGAAGGCTGTTTTTGCTTCTAATGGCAGCGATCATTGTTTGGAAGGATTGGAATTCCC
TTCAACTGTAGAGGATTTCTTGCTGAATGATCCTCCTGCATAATAATAGGTAATAATCCCGCTTCATTATCACTTTGGTTTGTGCATAATTCATCTTAATTTCACTAGCA
TGAGCAGTTTAATTGAAGCTTTGATTTCCCTTTGTGGGTCCATAATGGCCATTATTTAGCTCTATTTTCTCGTGAATACATCAGTACCTTCAATTTCATGTTCATTGTTT
GAAGGTAGAAAAACTTGTGAGAAAAAACTGGTCCTG
Protein sequenceShow/hide protein sequence
MGEKMPPPPPPPAPSISLHSSFFSSLKQVEKRLKLDNPSQRDALRPPSPRRAPSLPVEISSSSSVEESLSTPMYLHLPQTNTTSSLQESSEPPPEFLSNSSDLKSESNSP
NLIDCGQNRPVDDIQRLVQLLGLGDSFEEQELGARSGCNGCEGCESGFYSKIVGLKGPKCGKEVERLNGWIHYFWTGGGEAERLEPLRLAYLLMGKAVFASNGSDHCLEG
LEFPSTVEDFLLNDPPA