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CmoCh13G006550 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G006550
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiondof zinc finger protein DOF5.3-like
Genome locationCmo_Chr13:6928286..6928810
RNA-Seq ExpressionCmoCh13G006550
SyntenyCmoCh13G006550
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003851 - Zinc finger, Dof-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583987.1 Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]3.2e-8993.26Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRK KRPK IPFSSPSPDTLNAPPSLALDAGGP
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Query:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTT----INSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL
        LSYSGAGYHSTLNESSVA    VDVGAYNTMWTT    INSCSAGNYENLSLETENECCNLVQNHH HDHLP YARPL
Subjt:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTT----INSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL

KAG7019610.1 Dof zinc finger protein DOF3.5, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-8892.13Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTL NVPIGGGSRK KRPK IPFSSPSPDTLNAPPSLALDAGGP
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Query:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTT----INSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL
        LSYSGAGYHSTLNESSVA    VDVGAYNTMWTT    INSCSAGNYENLSLETEN+CCNLVQNHH HDHLP YARPL
Subjt:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTT----INSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL

XP_022927122.1 dof zinc finger protein DOF5.3-like [Cucurbita moschata]6.5e-98100Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Query:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL
        LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL
Subjt:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL

XP_023001754.1 dof zinc finger protein DOF5.3-like [Cucurbita maxima]5.9e-6784.81Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        MQGAAAA+NEETK TLIQPNCPRCDSSNTKFC+YNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRK KRPK IPFSSPSPDTLNAPPSLAL AGGP
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Query:  LSYSGAGYHSTLNESSVAVAVDVDVGAY-------------NTMWTT----INSCSAG
        LSYSGAGYHSTLNE SVAVAVDVDVGAY             NTMWTT    INSCSAG
Subjt:  LSYSGAGYHSTLNESSVAVAVDVDVGAY-------------NTMWTT----INSCSAG

XP_023520221.1 dof zinc finger protein 1-like [Cucurbita pepo subsp. pepo]5.6e-6582.69Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        MQGAAAA+NEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRK KRPK IPFSSPSPDTLNAPPSLALDAGGP
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Query:  LSYSGAGYHSTLNESSV-----AVAVDVDVGAYNTMWTT----INSCSAGNYENLS
        LSYSGAGYHST NESSV      ++   D G +NTMWTT    INSCSA +Y   S
Subjt:  LSYSGAGYHSTLNESSV-----AVAVDVDVGAYNTMWTT----INSCSAGNYENLS

TrEMBL top hitse value%identityAlignment
A0A0A0LXF4 Dof-type domain-containing protein4.2e-3449.74Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPD---TLNAPPSLAL
        MQGA      +    + +  CPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRK KRPK+  +P SS S D   TL  PP    
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPD---TLNAPPSLAL

Query:  DAGGPLSYSGAGYHSTLNESSVAVAVDVDVGA----------------YNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLP
           GPL  + + Y+     SS A    +DVGA                 NT+ T  +S S+GN +N S + EN    L+ NH    H P
Subjt:  DAGGPLSYSGAGYHSTLNESSVAVAVDVDVGA----------------YNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLP

A0A1S3B6E2 dof zinc finger protein DOF2.2-like2.1e-3349.47Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPD---TLNAPPSLAL
        MQGA      +    + +  CPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRK KRPK+  +P SS S D   TL  PP +  
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPD---TLNAPPSLAL

Query:  DAGGPLSYSGAGYHSTLNESSVAVAVDVDVGA---------------YNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLP
           GPL  + A  ++    SS A    +DVGA                NT+ T  +S S+GN +N S + +N    L+ NH    H P
Subjt:  DAGGPLSYSGAGYHSTLNESSVAVAVDVDVGA---------------YNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLP

A0A5A7UU19 Dof zinc finger protein DOF2.2-like2.1e-3349.47Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPD---TLNAPPSLAL
        MQGA      +    + +  CPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRK KRPK+  +P SS S D   TL  PP +  
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPD---TLNAPPSLAL

Query:  DAGGPLSYSGAGYHSTLNESSVAVAVDVDVGA---------------YNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLP
           GPL  + A  ++    SS A    +DVGA                NT+ T  +S S+GN +N S + +N    L+ NH    H P
Subjt:  DAGGPLSYSGAGYHSTLNESSVAVAVDVDVGA---------------YNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLP

A0A6J1EG92 dof zinc finger protein DOF5.3-like3.2e-98100Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Query:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL
        LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL
Subjt:  LSYSGAGYHSTLNESSVAVAVDVDVGAYNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL

A0A6J1KNK3 dof zinc finger protein DOF5.3-like2.9e-6784.81Show/hide
Query:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        MQGAAAA+NEETK TLIQPNCPRCDSSNTKFC+YNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRK KRPK IPFSSPSPDTLNAPPSLAL AGGP
Subjt:  MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Query:  LSYSGAGYHSTLNESSVAVAVDVDVGAY-------------NTMWTT----INSCSAG
        LSYSGAGYHSTLNE SVAVAVDVDVGAY             NTMWTT    INSCSAG
Subjt:  LSYSGAGYHSTLNESSVAVAVDVDVGAY-------------NTMWTT----INSCSAG

SwissProt top hitse value%identityAlignment
B9F1L8 Dof zinc finger protein 23.4e-2562.07Show/hide
Query:  GAAAATNEETKPTLIQP-NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPDT
        GA A T    +P   +  NCPRC+S+NTKFCYYNNYSL QPRYFCK+CRRYWT GG+LRNVP+GGGSRK KR  +  +P ++ S  T
Subjt:  GAAAATNEETKPTLIQP-NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKA--IPFSSPSPDT

Q8LE43 Dof zinc finger protein DOF2.15.8e-2580.33Show/hide
Query:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFS
        NCPRC+S NTKFCYYNNYSLSQPRYFCKSCRRYWT GGTLRNVP+GGG R+ KR  +  FS
Subjt:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFS

Q9M161 Dof zinc finger protein DOF4.13.4e-2574.65Show/hide
Query:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAP
        NCPRC+SSNTKFCYYNNYSL+QPRY CKSCRRYWT GG+LRNVP+GGGSRK K+    P SS S  T N P
Subjt:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAP

Q9SVC5 Dof zinc finger protein DOF3.52.6e-2564.29Show/hide
Query:  IQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        I P+CPRC SSNTKFCYYNNYSL+QPRYFCK CRRYWT GG+LRNVP+GGG RK +RPK       S    N   SL  ++G P
Subjt:  IQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

Q9SXG8 Dof zinc finger protein 11.0e-2450.88Show/hide
Query:  AAATNEETKPTLIQP-NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGPLSY
        A +T    +P   +  NCPRC+S+NTKFCYYNNYSL QPRYFCK+CRRYWT GG+LRNVP+GGGSRK KR  +   +S SP + +   S+   A   +S 
Subjt:  AAATNEETKPTLIQP-NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGPLSY

Query:  SGAGYHSTLNESSV
        +  G  ++ N   V
Subjt:  SGAGYHSTLNESSV

Arabidopsis top hitse value%identityAlignment
AT2G28510.1 Dof-type zinc finger DNA-binding family protein4.2e-2680.33Show/hide
Query:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFS
        NCPRC+S NTKFCYYNNYSLSQPRYFCKSCRRYWT GGTLRNVP+GGG R+ KR  +  FS
Subjt:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFS

AT2G46590.1 Dof-type zinc finger DNA-binding family protein9.3e-2657.29Show/hide
Query:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGPLSYSGAGYHSTLNES
        NCPRC+S+NTKFCYYNNYSL+QPRYFCK CRRYWT GG+LRNVP+GG SRK KR      SS S + L   PS   D   P+ +S   ++ +   S
Subjt:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGPLSYSGAGYHSTLNES

AT2G46590.2 Dof-type zinc finger DNA-binding family protein9.3e-2657.29Show/hide
Query:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGPLSYSGAGYHSTLNES
        NCPRC+S+NTKFCYYNNYSL+QPRYFCK CRRYWT GG+LRNVP+GG SRK KR      SS S + L   PS   D   P+ +S   ++ +   S
Subjt:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGPLSYSGAGYHSTLNES

AT3G52440.1 Dof-type zinc finger DNA-binding family protein1.9e-2664.29Show/hide
Query:  IQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP
        I P+CPRC SSNTKFCYYNNYSL+QPRYFCK CRRYWT GG+LRNVP+GGG RK +RPK       S    N   SL  ++G P
Subjt:  IQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGP

AT4G00940.1 Dof-type zinc finger DNA-binding family protein2.4e-2674.65Show/hide
Query:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAP
        NCPRC+SSNTKFCYYNNYSL+QPRY CKSCRRYWT GG+LRNVP+GGGSRK K+    P SS S  T N P
Subjt:  NCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGGGCTGCAGCTGCGACCAATGAAGAAACCAAACCCACACTGATCCAACCAAACTGCCCTCGCTGCGACTCTTCCAACACCAAGTTCTGTTACTACAATAACTA
CAGCCTTTCACAGCCGCGTTACTTTTGCAAGTCTTGTCGAAGGTACTGGACTCATGGTGGCACTCTCCGTAACGTCCCCATTGGCGGCGGCTCTAGAAAACAAAAGCGCC
CCAAAGCAATACCCTTTTCTTCCCCTTCTCCGGACACCCTCAATGCGCCGCCGTCTCTCGCCCTAGATGCTGGTGGACCTCTTTCCTATTCCGGTGCTGGGTATCACTCT
ACTCTCAATGAATCGTCTGTGGCTGTGGCTGTGGATGTGGATGTGGGGGCTTATAATACGATGTGGACTACCATCAATTCTTGCTCTGCAGGTAATTACGAAAATTTAAG
CTTAGAAACTGAAAATGAATGCTGTAATTTGGTCCAAAATCATCATCATCATGATCATCTGCCTCCCTATGCCCGCCCCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGGGCTGCAGCTGCGACCAATGAAGAAACCAAACCCACACTGATCCAACCAAACTGCCCTCGCTGCGACTCTTCCAACACCAAGTTCTGTTACTACAATAACTA
CAGCCTTTCACAGCCGCGTTACTTTTGCAAGTCTTGTCGAAGGTACTGGACTCATGGTGGCACTCTCCGTAACGTCCCCATTGGCGGCGGCTCTAGAAAACAAAAGCGCC
CCAAAGCAATACCCTTTTCTTCCCCTTCTCCGGACACCCTCAATGCGCCGCCGTCTCTCGCCCTAGATGCTGGTGGACCTCTTTCCTATTCCGGTGCTGGGTATCACTCT
ACTCTCAATGAATCGTCTGTGGCTGTGGCTGTGGATGTGGATGTGGGGGCTTATAATACGATGTGGACTACCATCAATTCTTGCTCTGCAGGTAATTACGAAAATTTAAG
CTTAGAAACTGAAAATGAATGCTGTAATTTGGTCCAAAATCATCATCATCATGATCATCTGCCTCCCTATGCCCGCCCCCTTTGA
Protein sequenceShow/hide protein sequence
MQGAAAATNEETKPTLIQPNCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKQKRPKAIPFSSPSPDTLNAPPSLALDAGGPLSYSGAGYHS
TLNESSVAVAVDVDVGAYNTMWTTINSCSAGNYENLSLETENECCNLVQNHHHHDHLPPYARPL