CuGenDBv2

Gene ID	CmoCh13G006680
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	pentatricopeptide repeat-containing protein At4g21705, mitochondrial
Genome location	Cmo_Chr13:6992854..6993749
RNA-Seq Expression	CmoCh13G006680
Synteny	CmoCh13G006680
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573262.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-29

75.82

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Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQ  FSKALTRYA+AGR YHTNRLK ATLY KISPLGDPS+SVEP LDGW+++GKKVR+A LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

XP_022139928.1 pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Momordica charantia]

4.8e-32

79.12

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Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQ LFSKALTRYA+AGRSYHTNR+K ATLY KISPLGDPSISV PELDGW+Q+GKK+RVA LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

XP_022954890.1 pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Cucurbita moschata]

5.0e-29

75.82

Show/hide

Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQ  FSKALTRYA+AGR YHTNRLK ATLY KISPLGDPS+SVEP LDGW+++GKKVR+A LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

XP_023542644.1 pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]

7.7e-30

76.92

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Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQ  FSKALTRYA+AGR YHTNRLK ATLY KISPLGDPS+SVEPELDGW+++GKKVR+A LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

XP_038893646.1 pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Benincasa hispida]

4.1e-31

80.22

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Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQKL SK LTRYAIA RSYHTNRLK ATLY KISPLGDPSISVEPELD W+Q+GKKVRVA LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXD9 Uncharacterized protein

6.0e-28

78.31

Show/hide

Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS
        MDQKLFSKALTRYA+A RSYHT RLK ATLY KISPLGDP ISVE ELDGW+Q+GKK+RVA LQR I D RKR RF+ ALE S
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS

A0A5A7UM45 Pentatricopeptide repeat-containing protein

6.0e-28

78.31

Show/hide

Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS
        MDQKLFSKALT YA+A RSYHT RLK ATLY KISPLGDPSISVE ELDGW+Q+GKKVRVA LQR I D RKR RF+ AL+ S
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS

A0A6J1CGU2 pentatricopeptide repeat-containing protein At4g21705, mitochondrial

2.3e-32

79.12

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Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQ LFSKALTRYA+AGRSYHTNR+K ATLY KISPLGDPSISV PELDGW+Q+GKK+RVA LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

A0A6J1GTN5 pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1

2.4e-29

75.82

Show/hide

Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQ  FSKALTRYA+AGR YHTNRLK ATLY KISPLGDPS+SVEP LDGW+++GKKVR+A LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

A0A6J1K124 pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1

5.4e-29

74.73

Show/hide

Query:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV
        MDQ  FSKALTRYA+A R YHTNRLK ATLY KISPLGDP++SVEPELDGW+++GKKVR+A LQR IHDLRKRKRFT ALE S   +  GV
Subjt:  MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGV

SwissProt top hits

e value

%identity

Alignment

Q84JR3 Pentatricopeptide repeat-containing protein At4g21705, mitochondrial

7.5e-20

63.29

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Query:  IAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGVKV
        IA R Y+TNR+K  TLY KISPLGDP  SV PEL  W+Q GKKV VA L R +HDLR+RKRF HALE S      GV V
Subjt:  IAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGVKV

Q9SKU6 Pentatricopeptide repeat-containing protein At2g20710, mitochondrial

8.1e-06

45.45

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Query:  TLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS
        TL  +++  GDPS S+   LDGW+ QG  V+ + L   I  LRK  RF+HAL+ S
Subjt:  TLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS

Arabidopsis top hits

e value

%identity

Alignment

AT2G20710.1 Tetratricopeptide repeat (TPR)-like superfamily protein

5.8e-07

45.45

Show/hide

Query:  TLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS
        TL  +++  GDPS S+   LDGW+ QG  V+ + L   I  LRK  RF+HAL+ S
Subjt:  TLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETS

AT4G21705.1 Tetratricopeptide repeat (TPR)-like superfamily protein

5.4e-21

63.29

Show/hide

Query:  IAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGVKV
        IA R Y+TNR+K  TLY KISPLGDP  SV PEL  W+Q GKKV VA L R +HDLR+RKRF HALE S      GV V
Subjt:  IAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGVKV

Sequences

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CDS sequence

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ATGGATCAGAAGCTCTTCTCCAAAGCCTTAACACGCTACGCTATAGCTGGCCGATCTTACCACACTAATCGGTTGAAAACGGCGACTCTTTATGTGAAAATTAGTCCATT
GGGCGATCCAAGCATTAGCGTGGAGCCGGAGCTCGACGGCTGGATTCAGCAGGGCAAGAAGGTACGAGTCGCTGCGCTTCAGAGATTCATTCATGACCTTCGCAAGCGCA
AGCGTTTTACTCATGCTCTTGAGACGAGCCTCACTTACGAAATGAAAGGAGTAAAAGTAGCTGTTGTCACTTCCAAGTTTGGTGCTTTTGCTTGA

mRNA sequence

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Protein sequence

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MDQKLFSKALTRYAIAGRSYHTNRLKTATLYVKISPLGDPSISVEPELDGWIQQGKKVRVAALQRFIHDLRKRKRFTHALETSLTYEMKGVKVAVVTSKFGAFA

CmoCh13G006680 (gene) of Cucurbita moschata (Rifu) v1 genome