; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G007050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G007050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNase H domain-containing protein
Genome locationCmo_Chr13:7165064..7167469
RNA-Seq ExpressionCmoCh13G007050
SyntenyCmoCh13G007050
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056936.1 putative ribonuclease H protein [Cucumis melo var. makuwa]2.5e-6480.95Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI
        +PG ASIGGVLRDH+AQFLLGYA+ IGRANS +AELTAL+KGLELVLENGWKDVW+EGD KGL+EI+   K+ KCVE RS FRYI SLILDL+NCKVSHI
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI

Query:  YREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR
        YREGN+VA+RFASIGHRYKKLE+WR++PPLETLDMMR DAEGKI+FR
Subjt:  YREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR

KAE8652698.1 hypothetical protein Csa_013405 [Cucumis sativus]4.9e-6072.15Show/hide
Query:  MSPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSH
        + PG ASIGGVLRDH+AQFLLGYA+ IGRA S++AEL AL+KGLELVLENGWKDVW+EGDAKGL+EI+   ++ KC+EARS  R+I SL+LD +NCKVSH
Subjt:  MSPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSH

Query:  IYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINTSGARLR
        IYREGN+VA+RFASIGHR KKLE+WR++PPLETLDMMR DAEGKI+FR     G   R
Subjt:  IYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINTSGARLR

KAG5516709.1 hypothetical protein RHGRI_037449 [Rhododendron griersonianum]1.4e-4661.38Show/hide
Query:  GRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYR
        G+ASIGGV R+H+A+FLLGYA+ IGR  STIAEL AL +GLELVLENGW+DVWLEGD+K L+EII  +K+ KC EA+    +IN +I +LNNC +SH+YR
Subjt:  GRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYR

Query:  EGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR
        EGN+ A++FA +GH+ KK +VWR  PP + L +M +DAEGKI  R
Subjt:  EGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR

KAG6584039.1 putative ribonuclease H protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-8099.34Show/hide
Query:  MSPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSH
        MSPGRASIGGVLRDHQAQFLLGYA+PIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSH
Subjt:  MSPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSH

Query:  IYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINT
        IYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINT
Subjt:  IYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINT

XP_038895327.1 uncharacterized protein LOC120083578 [Benincasa hispida]4.1e-5170.2Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI
        +PGRASIGGVLRDH AQFLLGYA+PIGRANST+AELTAL+KGLELVLENGWKDVW+EGDAKGL+EIIV  K+ KCVEARS F                  
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI

Query:  YREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINT
                 RFASIGHRYKKLE+WR+IPPLE LDMMR+DAEGKI+FR INT
Subjt:  YREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINT

TrEMBL top hitse value%identityAlignment
A0A0A0LUF5 RNase H domain-containing protein2.4e-6075.68Show/hide
Query:  MSPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSH
        + PG ASIGGVLRDH+AQFLLGYA+ IGRA S++AEL AL+KGLELVLENGWKDVW+EGDAKGL+EI+   ++ KC+EARS  R+I SL+LD +NCKVSH
Subjt:  MSPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSH

Query:  IYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR
        IYREGN+VA+RFASIGHR KKLE+WR++PPLETLDMMR DAEGKI+FR
Subjt:  IYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR

A0A2P6Q3E3 Putative ribonuclease H-like domain-containing protein8.7e-4761.64Show/hide
Query:  RASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYRE
        +ASIGG+ R+H+A+FLLGYA+ IGRANS IAEL AL +GLELVLENGW DVWLEGDAK L+ II  +K+ +C EA+     INS+I +LNNC ++HIYRE
Subjt:  RASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYRE

Query:  GNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNI
        GNR A++FA +GH Y+K ++W  IPP + L +M EDAEGK+ FR I
Subjt:  GNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNI

A0A314KMR0 Putative ribonuclease h protein6.7e-4757.93Show/hide
Query:  GRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYR
        G++SIGG+ R+H+A+FLLGYA+ IG+ NSTIAELTALS+GLEL++ENGW DVWLEGD+K L+++IV K+  +C E + Q  +IN LI ++ +C ++HI+R
Subjt:  GRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYR

Query:  EGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR
        EGNR A++FA +GH  KK ++WRDIPP + L +++EDAEGK  FR
Subjt:  EGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR

A0A5D3DS33 Putative ribonuclease H protein1.2e-6480.95Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI
        +PG ASIGGVLRDH+AQFLLGYA+ IGRANS +AELTAL+KGLELVLENGWKDVW+EGD KGL+EI+   K+ KCVE RS FRYI SLILDL+NCKVSHI
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI

Query:  YREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR
        YREGN+VA+RFASIGHRYKKLE+WR++PPLETLDMMR DAEGKI+FR
Subjt:  YREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFR

M5WIY9 RNase H domain-containing protein (Fragment)1.1e-4661.22Show/hide
Query:  GRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYR
        G+ASIGG+ R+H+A FLLGYA+PIGRANS IAEL AL +GLELVLENGW DVWLEGDAK L++II  +++ +C EA+    +IN +I ++NNC ++HIYR
Subjt:  GRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYR

Query:  EGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNI
        EGNR A++FA +GH   K +VW+ IPP + L +M EDAEGKI FR I
Subjt:  EGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNI

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657508.5e-0729.61Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARS---QFRYINSLILDLNNCKV
        +PG AS GGVLRD    +  G++  IGR ++  AEL  +  GL    E     V LE D+    E+IVG  K    ++       R  +  +      ++
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARS---QFRYINSLILDLNNCKV

Query:  SHIYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNI
         H+YRE NR+A+  A+            D+ P     ++RED  G    R +
Subjt:  SHIYREGNRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNI

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein1.6e-0525.2Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI
        +PG +    VL+      +    + +G A +  AE  AL  GL+  +E G+K++ ++GD+K +   I G+ K          +    L     + ++SH+
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI

Query:  YREGNRVANRFASIGHRYKKLEV
         R  N  A+  A++  R  + EV
Subjt:  YREGNRVANRFASIGHRYKKLEV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0728.32Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI
        +PG+A  G VLR      L    + +G A + +AE  AL  GL   L+ G+K+V + GD+  +   + G  K    +     +    L+       + HI
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI

Query:  YREGNRVANRFAS
         RE N  A++ A+
Subjt:  YREGNRVANRFAS

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0728.32Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI
        +PG+A  G VLR      L    + +G A + +AE  AL  GL   L+ G+K+V + GD+  +   + G  K    +     +    L+       + HI
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHI

Query:  YREGNRVANRFAS
         RE N  A++ A+
Subjt:  YREGNRVANRFAS

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.3e-0437.5Show/hide
Query:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLI
        +PG AS GGVLRD +  +  G++  IGR ++  AEL  +  GL    E     V LE D++ ++
Subjt:  SPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCCCGGAAGGGCCAGCATTGGGGGCGTTCTAAGAGACCATCAGGCTCAGTTTTTGCTGGGATACGCCAAACCCATAGGCCGAGCCAATAGCACCATCGCC
GAGCTCACTGCACTCAGCAAAGGGCTCGAATTGGTCCTCGAAAATGGGTGGAAAGACGTATGGCTGGAAGGAGATGCAAAGGGGTTGATAGAAATAATAGTTGGA
AAAAAGAAGGCTAAATGTGTGGAAGCTCGAAGCCAATTTCGGTACATAAATTCATTGATATTGGATTTGAATAATTGTAAGGTTAGTCATATATATAGAGAAGGT
AATAGAGTTGCCAATAGGTTTGCTTCCATTGGCCATCGCTATAAGAAGCTTGAAGTTTGGAGGGACATTCCTCCATTGGAGACATTGGACATGATGCGTGAAGAT
GCTGAGGGGAAGATTAGTTTTAGGAACATAAATACAAGTGGCGCTCGGTTACGTGTTAACACGCTGTGCTTGATCAAGTCTAAGTTCAGAGAAACAGGGGCCAAA
GCCTTTATTATTGTATGCATTCAGGGAACACAGGAAACGCCTAAATTTGCTAAACAAAGAAGTTTGTTGTGTATGGAATTAACACATACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCCCGGAAGGGCCAGCATTGGGGGCGTTCTAAGAGACCATCAGGCTCAGTTTTTGCTGGGATACGCCAAACCCATAGGCCGAGCCAATAGCACCATCGCC
GAGCTCACTGCACTCAGCAAAGGGCTCGAATTGGTCCTCGAAAATGGGTGGAAAGACGTATGGCTGGAAGGAGATGCAAAGGGGTTGATAGAAATAATAGTTGGA
AAAAAGAAGGCTAAATGTGTGGAAGCTCGAAGCCAATTTCGGTACATAAATTCATTGATATTGGATTTGAATAATTGTAAGGTTAGTCATATATATAGAGAAGGT
AATAGAGTTGCCAATAGGTTTGCTTCCATTGGCCATCGCTATAAGAAGCTTGAAGTTTGGAGGGACATTCCTCCATTGGAGACATTGGACATGATGCGTGAAGAT
GCTGAGGGGAAGATTAGTTTTAGGAACATAAATACAAGTGGCGCTCGGTTACGTGTTAACACGCTGTGCTTGATCAAGTCTAAGTTCAGAGAAACAGGGGCCAAA
GCCTTTATTATTGTATGCATTCAGGGAACACAGGAAACGCCTAAATTTGCTAAACAAAGAAGTTTGTTGTGTATGGAATTAACACATACATAG
Protein sequenceShow/hide protein sequence
MSPGRASIGGVLRDHQAQFLLGYAKPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYREG
NRVANRFASIGHRYKKLEVWRDIPPLETLDMMREDAEGKISFRNINTSGARLRVNTLCLIKSKFRETGAKAFIIVCIQGTQETPKFAKQRSLLCMELTHT