CuGenDBv2

Gene ID	CmoCh13G007330
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like
Genome location	Cmo_Chr13:7280075..7283227
RNA-Seq Expression	CmoCh13G007330
Synteny	CmoCh13G007330
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593211.1 Large ribosomal RNA subunit accumulation protein YCED-like 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-181

99.38

Show/hide

Query:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
        MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKP+DESFFEDNTIITDWEDQEGEIEEMSSPWEG
Subjt:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG

Query:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
        AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
Subjt:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI

Query:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
        LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
Subjt:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD

Query:  VKKNDFGPLGNLKRQMQKNS
        VKKNDFGPLGNL+RQMQKNS
Subjt:  VKKNDFGPLGNLKRQMQKNS

XP_022933174.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Cucurbita moschata]

6.0e-182

100

Show/hide

Query:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
        MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
Subjt:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG

Query:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
        AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
Subjt:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI

Query:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
        LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
Subjt:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD

Query:  VKKNDFGPLGNLKRQMQKNS
        VKKNDFGPLGNLKRQMQKNS
Subjt:  VKKNDFGPLGNLKRQMQKNS

XP_023004599.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucurbita maxima]

9.9e-177

96.88

Show/hide

Query:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
        MSAVFPTSAVVSNGF+KIGCLKSKGIAYSNSNFRFVACKIPGT MKNIHPSLGDSCIKLKSTS+KCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
Subjt:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG

Query:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
        AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
Subjt:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI

Query:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
        LLSQDP+DEPEVINVGVINGQDMFKTYDGYG EDDE+SIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLN GSCNCS+QD
Subjt:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD

Query:  VKKNDFGPLGNLKRQMQKNS
        VKKNDFGPLGNLKRQ+QK S
Subjt:  VKKNDFGPLGNLKRQMQKNS

XP_023514713.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucurbita pepo subsp. pepo]

2.5e-180

98.75

Show/hide

Query:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
        MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGT MKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
Subjt:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG

Query:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
        AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
Subjt:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI

Query:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
        LLSQDP+DEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICD+GCKGMCLKCGINLNTGSCNCSKQD
Subjt:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD

Query:  VKKNDFGPLGNLKRQMQKNS
        V+KNDFGPLGNLKRQMQKNS
Subjt:  VKKNDFGPLGNLKRQMQKNS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

2.3e-141

79.32

Show/hide

Query:  MSAVFPTSAVV----SNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS
        MSA FPTS+VV    SN FIK+  LKSKG    +S+     C++P   M+NI PSLGDSCI LKSTS+KCVKPT +S FEDN+IITDWED +G+IEEM S
Subjt:  MSAVFPTSAVV----SNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS

Query:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS
        PWEGA+IYKRNSSVSH+EYCTTLERLGLEKLSTDVSKSRAS MGL V K VKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCE A EC+FS
Subjt:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS

Query:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC
        NFSI+LS++P++EP+VIN+G+I+GQDMFKTYDG  DEDDEE +DLDDQLYFPL EKEIDISKNIRD+LHLEIT+NAICD GCKGMCL CGINLNTGSCNC
Subjt:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLK+QMQKNS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

5.2e-139

77.16

Show/hide

Query:  MSAVFPTSAVVSNG----FIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS
        M A FPTS+VVS+     FI +   +SKG    NS+FR     +P   M+NI PSLGD CIK+KSTS+KCVKPT +S FEDN+IITDW DQEG+IEEMSS
Subjt:  MSAVFPTSAVVSNG----FIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS

Query:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS
        PWEGA+IYKRNSSVSH+EYCTTLERLGLEKLSTDVSKSRAS MGL VTK VKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPA EC+FS
Subjt:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS

Query:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC
        NFSILLS++P++EP+VIN+G+I+GQD+FKT +G  DEDDEES+DLDDQLYFP  +KEIDISKNIRD+LHLEIT+N IC+ GCKGMCL CGINLNTGSCNC
Subjt:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

5.2e-139

77.16

Show/hide

Query:  MSAVFPTSAVVSNG----FIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS
        M A FPTS+VVS+     FI +   +SKG    NS+FR     +P   M+NI PSLGD CIK+KSTS+KCVKPT +S FEDN+IITDW DQEG+IEEMSS
Subjt:  MSAVFPTSAVVSNG----FIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS

Query:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS
        PWEGA+IYKRNSSVSH+EYCTTLERLGLEKLSTDVSKSRAS MGL VTK VKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPA EC+FS
Subjt:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS

Query:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC
        NFSILLS++P++EP+VIN+G+I+GQD+FKT +G  DEDDEES+DLDDQLYFP  +KEIDISKNIRD+LHLEIT+N IC+ GCKGMCL CGINLNTGSCNC
Subjt:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

A0A5A7VN29 Uncharacterized protein

5.2e-139

77.16

Show/hide

Query:  MSAVFPTSAVVSNG----FIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS
        M A FPTS+VVS+     FI +   KSKG    NS+FR     +P   M+NI PSLGD CIK+KSTS+KCVKPT +S FEDN+IITDW DQEG+IEEM S
Subjt:  MSAVFPTSAVVSNG----FIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSS

Query:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS
        PWEGA+IYKRNSSVSH+EYCTTLERLGLEKLSTDVSKSRAS MGL VTK VKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPA EC+FS
Subjt:  PWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFS

Query:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC
        NFSILLS++P++EP+VIN+G+I+GQD+FKT +G  DEDDEES+DLDDQLYFP  +KEIDISKNIRD+LHLEIT+N IC+ GCKGMCL CGINLNTGSCNC
Subjt:  NFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

A0A6J1H6G2 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like

2.9e-182

100

Show/hide

Query:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
        MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
Subjt:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG

Query:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
        AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
Subjt:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI

Query:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
        LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
Subjt:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD

Query:  VKKNDFGPLGNLKRQMQKNS
        VKKNDFGPLGNLKRQMQKNS
Subjt:  VKKNDFGPLGNLKRQMQKNS

A0A6J1KWR1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

4.8e-177

96.88

Show/hide

Query:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
        MSAVFPTSAVVSNGF+KIGCLKSKGIAYSNSNFRFVACKIPGT MKNIHPSLGDSCIKLKSTS+KCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG
Subjt:  MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEG

Query:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
        AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI
Subjt:  AIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSI

Query:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD
        LLSQDP+DEPEVINVGVINGQDMFKTYDGYG EDDE+SIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLN GSCNCS+QD
Subjt:  LLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQD

Query:  VKKNDFGPLGNLKRQMQKNS
        VKKNDFGPLGNLKRQ+QK S
Subjt:  VKKNDFGPLGNLKRQMQKNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

2.5e-53

48.31

Show/hide

Query:  ESFFEDNTIITDWEDQEGEIEE-MSSPWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLY--VTKAVKDYPFGTPVQISVDVTRKEKK
        + FF      T  E +   I++ + SPWEGA++Y+R+++V HLEY +TLERLGL  LS+  S++RA+++GL      +    P  TPV +SVDVTR+  +
Subjt:  ESFFEDNTIITDWEDQEGEIEE-MSSPWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLY--VTKAVKDYPFGTPVQISVDVTRKEKK

Query:  LRLDGIVKTVITLNCYRCCEPAAECVFSNFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYG-DEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLE
        LRLDGIV+TVITL C+RC EPA + +F+NFS+LL++DP++E    ++G I  +D  K         D ++ ID DD+L+FP  +KEIDISK+IRD++HLE
Subjt:  LRLDGIVKTVITLNCYRCCEPAAECVFSNFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYG-DEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLE

Query:  ITLNAICDSGCKGMCLKCGINLN-TGSCNCSKQDVK
        ITL+A+C+  CKG+CL CG NLN T SC C  ++V+
Subjt:  ITLNAICDSGCKGMCLKCGINLN-TGSCNCSKQDVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

2.1e-84

61.07

Show/hide

Query:  IKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPV
        IKL   +   +  + ESF E +TI  DWEDQE EIE+  SPWEG+++Y+RN+SV+H+EYCTTLERLGL +LSTDVSK RAS MGL VTK VKDYP GTPV
Subjt:  IKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPV

Query:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDI
        Q+SVDV RK+KKLRLDGIV+TVITL C RC E   E +FSNFS+LL+++P++EP+VI++G   G D  +  D   D++D+  ID +D+L+FP   KEIDI
Subjt:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDI

Query:  SKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK
        SK+IRDL+HLEIT+ AICDS CKGMCLKCG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  SKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

1.5e-85

61.07

Show/hide

Query:  IKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPV
        IKL   +   +  + ESF E +TI  DWEDQE EIE+  SPWEG+++Y+RN+SV+H+EYCTTLERLGL +LSTDVSK RAS MGL VTK VKDYP GTPV
Subjt:  IKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEGAIIYKRNSSVSHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPV

Query:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDI
        Q+SVDV RK+KKLRLDGIV+TVITL C RC E   E +FSNFS+LL+++P++EP+VI++G   G D  +  D   D++D+  ID +D+L+FP   KEIDI
Subjt:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSILLSQDPLDEPEVINVGVINGQDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDI

Query:  SKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK
        SK+IRDL+HLEIT+ AICDS CKGMCLKCG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  SKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK

Sequences

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CDS sequence

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ATGTCAGCTGTATTCCCCACATCAGCCGTAGTTTCCAATGGATTTATTAAGATTGGCTGCTTGAAATCCAAAGGAATTGCTTATTCCAATTCCAATTTCCGCTTTGTTGC
TTGTAAAATTCCAGGGACATCTATGAAAAATATACATCCAAGCTTGGGTGACTCATGTATTAAGCTGAAATCTACTTCCCTAAAGTGTGTGAAACCTACTGATGAGTCCT
TTTTTGAAGACAATACTATAATTACTGATTGGGAGGATCAAGAAGGGGAAATTGAAGAGATGAGCTCACCTTGGGAAGGAGCAATAATTTACAAGAGGAACTCTTCTGTT
TCTCATTTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAAAAGCTTTCGACTGATGTCTCGAAATCTCGAGCGTCCGAGATGGGACTATATGTGACGAAGGCTGT
GAAAGATTATCCATTTGGAACTCCTGTTCAAATCTCCGTTGATGTTACGAGGAAAGAAAAAAAGCTGAGGCTTGATGGTATCGTTAAAACTGTCATCACTCTCAATTGTT
ATAGGTGTTGCGAACCTGCTGCTGAATGTGTTTTCTCAAACTTCTCAATTTTACTAAGCCAAGACCCGCTTGACGAACCCGAGGTCATAAACGTTGGAGTCATCAACGGG
CAGGATATGTTCAAGACATATGATGGATATGGCGACGAAGATGATGAAGAGTCGATTGATTTGGATGATCAACTCTATTTTCCTCTGGGAGAGAAAGAAATAGATATATC
AAAGAACATAAGAGACCTCTTGCATCTGGAAATTACTTTGAATGCGATATGCGATTCGGGATGCAAAGGTATGTGTCTGAAATGTGGTATAAATTTGAATACTGGAAGCT
GTAACTGTAGTAAGCAGGATGTAAAGAAGAACGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAGAACTCGTAA

mRNA sequence

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TAGCTCTAATCTTAATGGCCCGTTTGTGATAAGGAACTGAAATAAAAATTCGCTATAAATACAATCCTTCCTTGATTTTAGCCACCGGATAAATCCTTTTTCGCAGGGAG
ACGCCAAAATTTCCTTCCTCCACTTTCGCGAAACAGTGTACAAATGTCAGCTGTATTCCCCACATCAGCCGTAGTTTCCAATGGATTTATTAAGATTGGCTGCTTGAAAT
CCAAAGGAATTGCTTATTCCAATTCCAATTTCCGCTTTGTTGCTTGTAAAATTCCAGGGACATCTATGAAAAATATACATCCAAGCTTGGGTGACTCATGTATTAAGCTG
AAATCTACTTCCCTAAAGTGTGTGAAACCTACTGATGAGTCCTTTTTTGAAGACAATACTATAATTACTGATTGGGAGGATCAAGAAGGGGAAATTGAAGAGATGAGCTC
ACCTTGGGAAGGAGCAATAATTTACAAGAGGAACTCTTCTGTTTCTCATTTGGAGTATTGCACAACATTAGAGAGGCTTGGATTGGAAAAGCTTTCGACTGATGTCTCGA
AATCTCGAGCGTCCGAGATGGGACTATATGTGACGAAGGCTGTGAAAGATTATCCATTTGGAACTCCTGTTCAAATCTCCGTTGATGTTACGAGGAAAGAAAAAAAGCTG
AGGCTTGATGGTATCGTTAAAACTGTCATCACTCTCAATTGTTATAGGTGTTGCGAACCTGCTGCTGAATGTGTTTTCTCAAACTTCTCAATTTTACTAAGCCAAGACCC
GCTTGACGAACCCGAGGTCATAAACGTTGGAGTCATCAACGGGCAGGATATGTTCAAGACATATGATGGATATGGCGACGAAGATGATGAAGAGTCGATTGATTTGGATG
ATCAACTCTATTTTCCTCTGGGAGAGAAAGAAATAGATATATCAAAGAACATAAGAGACCTCTTGCATCTGGAAATTACTTTGAATGCGATATGCGATTCGGGATGCAAA
GGTATGTGTCTGAAATGTGGTATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGATGTAAAGAAGAACGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAAT
GCAGAAGAACTCGTAATAGTTGAACGCAGATCATGAATGCTGAGCTCATTTACAACCATGTATTTATAATATGAGTTTCGTTACTACGTGCATGTCATGATTGATTTAAA
CATGACCTATTTATATTCATGTGGGCTCACTAGCCTTAATCATGCCAATCGAGCGAACTTGAGCCAAATGCCAAACTGAGTTGACAAGGAGCTGTTGAGTTGATTGAAGC
CGGTTAGGAGTTACATGCGCTGACCGAAGCCAGCTAGGGCACTGCACGGAGGGCGATCAGTTGAGGGAGCCGACTGAGAGCCGCTTCCTTAGATGTCGGCTAGGAGTTGC
ACGGAAGGCGATCAATTGAGGGAACTGATTGGGAGTCACTTCCTCTTCAACCAATGTAGGATCTTACAACATGACAATGATAATAACACTTGTTTGGAAGAACAAAATTC
AAACACGATGATATTTCTATTCGAACTCAAATTTCGATCAACCAACATGATATCTCAGTTGATCTCACA

Protein sequence

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MSAVFPTSAVVSNGFIKIGCLKSKGIAYSNSNFRFVACKIPGTSMKNIHPSLGDSCIKLKSTSLKCVKPTDESFFEDNTIITDWEDQEGEIEEMSSPWEGAIIYKRNSSV
SHLEYCTTLERLGLEKLSTDVSKSRASEMGLYVTKAVKDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAAECVFSNFSILLSQDPLDEPEVINVGVING
QDMFKTYDGYGDEDDEESIDLDDQLYFPLGEKEIDISKNIRDLLHLEITLNAICDSGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQKNS

CmoCh13G007330 (gene) of Cucurbita moschata (Rifu) v1 genome