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CmoCh13G007560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G007560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPatatin
Genome locationCmo_Chr13:7369855..7370247
RNA-Seq ExpressionCmoCh13G007560
SyntenyCmoCh13G007560
Gene Ontology termsGO:0000162 - tryptophan biosynthetic process (biological process)
GO:0006629 - lipid metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056869.1 hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa]1.1e-3673.91Show/hide
Query:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS
        MQHNKP+ TF KSH  MAATA VAIGTRGTIGSLIKKEIDYFAKIELE  +S  SQR Q P+MA+SGC SSPPTFW S+MSWRRKKK + +RF+ K+CS+
Subjt:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS

Query:  AFDVSESNQMNKISG
         FD S SN+MNKISG
Subjt:  AFDVSESNQMNKISG

KAG6584077.1 hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia]8.7e-5598.25Show/hide
Query:  MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGF
        MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSS  SQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGF
Subjt:  MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGF

Query:  NYTILQNNFHSLHM
        NYTILQNNFHSLHM
Subjt:  NYTILQNNFHSLHM

KAG7019678.1 hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-6497.69Show/hide
Query:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS
        MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSS  SQRPQAPDMATSGCSS PPTFWHSVMSWRRKKKRSRSRFVPKICSS
Subjt:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS

Query:  AFDVSESNQMNKISGFNYTILQNNFHSLHM
        AFDVSESNQMNKISGFNYTILQNNFHSLHM
Subjt:  AFDVSESNQMNKISGFNYTILQNNFHSLHM

XP_016898893.1 PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]6.3e-3774.56Show/hide
Query:  MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGF
        MAATA VAIGTRGTIGSLIKKEIDYFAKIELE  +S  SQR Q P+MA+SGC SSPPTFW S+MSWRRKKK + +RF+ K+CS+ FD S SN+MNKISG 
Subjt:  MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGF

Query:  NYTILQNNFHSLHM
        +YTILQN+FHSLH+
Subjt:  NYTILQNNFHSLHM

XP_022140128.1 uncharacterized protein LOC111010862 [Momordica charantia]1.7e-4274.05Show/hide
Query:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSG-CSSSPPTFWHSVMSWRRKKKRSRSRFVPKICS
        MQH+KPSTTFCK  E+MAATA VAIGTRGT+GSL+KKEIDYFAKIE ERCS          DMA+S   SSSPPTFWH+VMSWRRKKKR  +RF+ KIC 
Subjt:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSG-CSSSPPTFWHSVMSWRRKKKRSRSRFVPKICS

Query:  SAFDVSESNQMNKISGFNYTILQNNFHSLHM
        SAFDVS SN++NKISGFNYTILQN+F+SLHM
Subjt:  SAFDVSESNQMNKISGFNYTILQNNFHSLHM

TrEMBL top hitse value%identityAlignment
A0A0A0LX43 Uncharacterized protein1.1e-4273.08Show/hide
Query:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS
        MQHNKP+ TF KSH  MAA A VAIGTRGTIGSL+KKEIDYFAKIELE  +S  SQR Q P+MA+SGC SSPPTFW S+MSWRRK K + +RFV K+CS+
Subjt:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS

Query:  AFDVSESNQMNKISGFNYTILQNNFHSLHM
         FD S SN+MNKISG +YTILQN+FHSLHM
Subjt:  AFDVSESNQMNKISGFNYTILQNNFHSLHM

A0A1S4DSE9 uncharacterized protein LOC1034854093.0e-3774.56Show/hide
Query:  MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGF
        MAATA VAIGTRGTIGSLIKKEIDYFAKIELE  +S  SQR Q P+MA+SGC SSPPTFW S+MSWRRKKK + +RF+ K+CS+ FD S SN+MNKISG 
Subjt:  MAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGF

Query:  NYTILQNNFHSLHM
        +YTILQN+FHSLH+
Subjt:  NYTILQNNFHSLHM

A0A5A7UTL1 Uncharacterized protein5.2e-3773.91Show/hide
Query:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS
        MQHNKP+ TF KSH  MAATA VAIGTRGTIGSLIKKEIDYFAKIELE  +S  SQR Q P+MA+SGC SSPPTFW S+MSWRRKKK + +RF+ K+CS+
Subjt:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSS

Query:  AFDVSESNQMNKISG
         FD S SN+MNKISG
Subjt:  AFDVSESNQMNKISG

A0A5N6QB68 Uncharacterized protein2.4e-2654.47Show/hide
Query:  KPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMA-TSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFD
        K S T  K  EKM A A VAIGTRGT+GSL++KEI+YF KIE++RC S    + Q  D+A TSG S+S P+FW  +M+W+RKK+RS S  +P IC SA +
Subjt:  KPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMA-TSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFD

Query:  VSESNQMNKISGFNYTILQNNFH
        V++SN++N+I G+NY IL+N+ H
Subjt:  VSESNQMNKISGFNYTILQNNFH

A0A6J1CHB1 uncharacterized protein LOC1110108628.2e-4374.05Show/hide
Query:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSG-CSSSPPTFWHSVMSWRRKKKRSRSRFVPKICS
        MQH+KPSTTFCK  E+MAATA VAIGTRGT+GSL+KKEIDYFAKIE ERCS          DMA+S   SSSPPTFWH+VMSWRRKKKR  +RF+ KIC 
Subjt:  MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSG-CSSSPPTFWHSVMSWRRKKKRSRSRFVPKICS

Query:  SAFDVSESNQMNKISGFNYTILQNNFHSLHM
        SAFDVS SN++NKISGFNYTILQN+F+SLHM
Subjt:  SAFDVSESNQMNKISGFNYTILQNNFHSLHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21780.1 unknown protein5.3e-1037.5Show/hide
Query:  ASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQR-----PQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSR---SRFVPKICSSAFDVSESNQMNK
        A +AIGTRGTIGSL++KEIDYF       C      R                SSS    W S   WR+KK+++R    +F P +CS+     E +  N+
Subjt:  ASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQR-----PQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSR---SRFVPKICSSAFDVSESNQMNK

Query:  ISGFNYTILQNN
        + GFNY IL+++
Subjt:  ISGFNYTILQNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCACAATAAACCCAGCACCACATTTTGCAAATCCCATGAAAAAATGGCTGCCACTGCTTCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCATCAAGAA
GGAAATTGATTATTTTGCCAAGATTGAGCTTGAAAGATGCAGCAGCGGCTGCTCACAAAGGCCCCAAGCACCTGACATGGCTACTTCTGGCTGCAGCAGTTCGCCACCCA
CTTTCTGGCACTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCGCAGCAGAAGTCGATTTGTCCCGAAAATATGCTCATCGGCTTTTGATGTTTCTGAAAGCAATCAGATG
AATAAGATTTCCGGGTTCAATTACACGATCCTTCAGAATAATTTCCACAGCTTACACATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGCACAATAAACCCAGCACCACATTTTGCAAATCCCATGAAAAAATGGCTGCCACTGCTTCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCATCAAGAA
GGAAATTGATTATTTTGCCAAGATTGAGCTTGAAAGATGCAGCAGCGGCTGCTCACAAAGGCCCCAAGCACCTGACATGGCTACTTCTGGCTGCAGCAGTTCGCCACCCA
CTTTCTGGCACTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCGCAGCAGAAGTCGATTTGTCCCGAAAATATGCTCATCGGCTTTTGATGTTTCTGAAAGCAATCAGATG
AATAAGATTTCCGGGTTCAATTACACGATCCTTCAGAATAATTTCCACAGCTTACACATGTAG
Protein sequenceShow/hide protein sequence
MQHNKPSTTFCKSHEKMAATASVAIGTRGTIGSLIKKEIDYFAKIELERCSSGCSQRPQAPDMATSGCSSSPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQM
NKISGFNYTILQNNFHSLHM