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CmoCh13G009270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G009270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNHL domain-containing protein
Genome locationCmo_Chr13:8166979..8167473
RNA-Seq ExpressionCmoCh13G009270
SyntenyCmoCh13G009270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584232.1 hypothetical protein SDJN03_20164, partial [Cucurbita argyrosperma subsp. sororia]1.2e-8898.78Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
        NRPAAVK GKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQ+FSDRFSAVPASGKSSGAAVAS
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS

XP_022923865.1 uncharacterized protein LOC111431456 [Cucurbita moschata]4.7e-90100Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
        NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS

XP_023000665.1 uncharacterized protein LOC111495035 [Cucurbita maxima]4.4e-8898.17Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDGGFKEIESIGEIDGADALLASRRY CFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
        NRPAAVKLGKFQYDPISYALNFDEGHNGDV+FEGDEYSGGFQNFSDRFSAVPAS KSSGAAVAS
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS

XP_023519821.1 uncharacterized protein LOC111783153 [Cucurbita pepo subsp. pepo]2.3e-8999.39Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDGGFKEIESIGEIDGADALLASRRY CFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
        NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS

XP_038894780.1 uncharacterized protein LOC120083201 [Benincasa hispida]1.4e-7888.82Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDG FKE+ESIGEIDGADALLAS+RY CFCFPCFG  RSASDE+SWWER K KAKSTKFDGEDHWW+GGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYS-GGFQNFSDRFSAVPASGKSSGA
        NRPA VKLGKFQYDPISYALNFD+GHNGDVDF+GDEYS GGFQNFSDRF+AVP   KSSGA
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYS-GGFQNFSDRFSAVPASGKSSGA

TrEMBL top hitse value%identityAlignment
A0A0A0LU30 Uncharacterized protein1.4e-7182.14Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGED-HWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFN
        MGDRDG FKE+ES   IDGADALL S+RY CFCFPCFG SRS SDELSWWER K KAKSTKFD ED HWW+GGIRSLKKLREWSEIVAGPRWKTFIRRFN
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGED-HWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFN

Query:  RNRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYS--GGFQNFSDRFSAV-PASGKSSGAAVAS
        RNRPA VKLGKFQYDPISYALNFDEGHNGDVDF+GDEY+  GGFQNFSDRF+A+ PA  KSS +A  +
Subjt:  RNRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYS--GGFQNFSDRFSAV-PASGKSSGAAVAS

A0A5A7ULQ3 Uncharacterized protein5.3e-7182.04Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDG FKE+ES   IDGADALLAS+RY CFCFPCFG +RS SDELSWWER K KAKSTKFDGEDHWW+GGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGH-NGDVDFEGD-EYS--GGFQNFSDRFSAVPASGKSSGAAVA
        NRPA VKLGKFQYDPISYALNFDEGH NGDVDFEG+ EY+  GGFQNFSDRF+AVP +   S ++ A
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGH-NGDVDFEGD-EYS--GGFQNFSDRFSAVPASGKSSGAAVA

A0A5D3BLD0 Uncharacterized protein4.5e-7081.44Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDG FKE+ES   IDGADALLAS+RY CFCFPCFG +RS SDELSWWER K KAKSTKFDGEDHWW+G IRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGH-NGDVDFEGD-EYS--GGFQNFSDRFSAVPASGKSSGAAVA
        NRPA VKLGKFQYDPISYALNFDEGH NGDVDFEG+ EY+  GGFQNFSDRF+AVP +   S ++ A
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGH-NGDVDFEGD-EYS--GGFQNFSDRFSAVPASGKSSGAAVA

A0A6J1ED51 uncharacterized protein LOC1114314562.3e-90100Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
        NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS

A0A6J1KJ01 uncharacterized protein LOC1114950352.1e-8898.17Show/hide
Query:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
        MGDRDGGFKEIESIGEIDGADALLASRRY CFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR
Subjt:  MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR

Query:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS
        NRPAAVKLGKFQYDPISYALNFDEGHNGDV+FEGDEYSGGFQNFSDRFSAVPAS KSSGAAVAS
Subjt:  NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)7.9e-1935.63Show/hide
Query:  IGEIDGADAL---LASRRYGCFCFPCFGQSRSASDELS-WWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNR-------
        I E+D  D +   L ++R  CF  PC   S+ ++   S WW+R        K + ++ WW   IR  +++REWSE+VAGPRWKT+IRRF R+        
Subjt:  IGEIDGADAL---LASRRYGCFCFPCFGQSRSASDELS-WWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNR-------

Query:  ---------------PAAVKLGKFQYDPISYALNFDEGH-NGDVDFEGDEYSGGFQNFSDRFSA--VPASGKSS
                         +   GKF+YD +SY+LNFD+G+  G  D   DE+   ++++S RF+A  +P S K S
Subjt:  ---------------PAAVKLGKFQYDPISYALNFDEGH-NGDVDFEGDEYSGGFQNFSDRFSA--VPASGKSS

AT3G48020.1 unknown protein1.2e-1944.96Show/hide
Query:  PCFGQSRSASDEL--SWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAV---KLGKFQYDPISYALNFDEGHNGD
        P  G+S   S  +  SWW+R            E  WW   +R+  K+REWSEIVAGPRWKTFIRRFNR+           KF+YDP+SY L+F++    D
Subjt:  PCFGQSRSASDEL--SWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAV---KLGKFQYDPISYALNFDEGHNGD

Query:  VDFEGDEYSGGFQNFSDRFSAVP-ASGKS
         D  G    GG ++FS R+++VP ASGKS
Subjt:  VDFEGDEYSGGFQNFSDRFSAVP-ASGKS

AT5G14890.1 NHL domain-containing protein1.2e-1939.77Show/hide
Query:  FKEIES--IGEIDGADAL---LASRRYGCFCFPCFGQSRSASDELS-WWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR-
        F  +ES  I E+D  D +   + ++R  CF  PC G S+ +    S WW+R +      K + ++ WW  G     K+REWSEIVAGP+WKTFIRRF R 
Subjt:  FKEIES--IGEIDGADAL---LASRRYGCFCFPCFGQSRSASDELS-WWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNR-

Query:  -----------NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSA--VPASGKSS
                   NRP  V    F+YD  SY+LNFD+G      FE DE+   ++++S RF+A  +P S K S
Subjt:  -----------NRPAAVKLGKFQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSA--VPASGKSS

AT5G25240.1 unknown protein3.7e-0835.92Show/hide
Query:  GCFCFPCFGQSRSASDELSWWERAKAKAKST-KFDG---EDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLGKFQYDPISYALNFDEG
        GC  F  F  +R        W R   +++S   + G   E+   + G   LK L+E SE +AGP+WK FIR F+  R    +   F YD  +Y+LNFD+G
Subjt:  GCFCFPCFGQSRSASDELSWWERAKAKAKST-KFDG---EDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLGKFQYDPISYALNFDEG

Query:  HNG
         +G
Subjt:  HNG

AT5G62865.1 unknown protein1.0e-2147.22Show/hide
Query:  CFCFPCFGQSRSASD-ELSWWERAKA---KAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLG---KFQYDPISYALNFD
        C CFP F +SRS++    S W R +       S     E  WW   IR+  K+REWSEIVAGPRWKTFIRRFNR+           KFQYDP+SY+LNFD
Subjt:  CFCFPCFGQSRSASD-ELSWWERAKA---KAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLG---KFQYDPISYALNFD

Query:  EGHNGDVDFEGDEY--SGGFQNFSDRFSAVPA-SGKSSGAAVAS
        +      D E DEY   GG ++FS RF++VP  SGK+   +  S
Subjt:  EGHNGDVDFEGDEY--SGGFQNFSDRFSAVPA-SGKSSGAAVAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGACCGTGACGGCGGTTTCAAAGAAATAGAATCAATCGGAGAAATCGACGGCGCCGATGCTCTTTTGGCGTCTAGACGCTATGGTTGTTTTTGCTTCCCTTGCTT
TGGACAAAGCCGGTCGGCTTCCGACGAACTTTCTTGGTGGGAACGGGCGAAGGCGAAAGCGAAATCGACGAAGTTCGACGGCGAGGATCATTGGTGGAGTGGAGGAATCA
GATCCCTCAAGAAGCTTCGTGAATGGTCCGAGATCGTCGCTGGTCCGAGATGGAAGACCTTCATTCGCCGGTTCAATCGGAACCGGCCTGCCGCCGTGAAGCTTGGGAAA
TTCCAATATGATCCCATCAGTTACGCTTTGAATTTCGACGAGGGACACAACGGTGATGTGGATTTCGAAGGGGATGAATACAGTGGTGGGTTTCAAAACTTCTCCGACCG
GTTTTCCGCCGTGCCGGCTTCGGGGAAGTCGTCGGGCGCGGCGGTGGCTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGACCGTGACGGCGGTTTCAAAGAAATAGAATCAATCGGAGAAATCGACGGCGCCGATGCTCTTTTGGCGTCTAGACGCTATGGTTGTTTTTGCTTCCCTTGCTT
TGGACAAAGCCGGTCGGCTTCCGACGAACTTTCTTGGTGGGAACGGGCGAAGGCGAAAGCGAAATCGACGAAGTTCGACGGCGAGGATCATTGGTGGAGTGGAGGAATCA
GATCCCTCAAGAAGCTTCGTGAATGGTCCGAGATCGTCGCTGGTCCGAGATGGAAGACCTTCATTCGCCGGTTCAATCGGAACCGGCCTGCCGCCGTGAAGCTTGGGAAA
TTCCAATATGATCCCATCAGTTACGCTTTGAATTTCGACGAGGGACACAACGGTGATGTGGATTTCGAAGGGGATGAATACAGTGGTGGGTTTCAAAACTTCTCCGACCG
GTTTTCCGCCGTGCCGGCTTCGGGGAAGTCGTCGGGCGCGGCGGTGGCTAGTTAG
Protein sequenceShow/hide protein sequence
MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKSTKFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLGK
FQYDPISYALNFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS