; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G009290 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G009290
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionD-ribose-binding periplasmic protein
Genome locationCmo_Chr13:8179287..8180204
RNA-Seq ExpressionCmoCh13G009290
SyntenyCmoCh13G009290
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584235.1 hypothetical protein SDJN03_20167, partial [Cucurbita argyrosperma subsp. sororia]1.0e-8798.83Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRR  DIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
        NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

XP_008438114.1 PREDICTED: uncharacterized protein LOC103483316 [Cucumis melo]1.8e-7182.02Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAIDTASLIIQHPNGKVDR YWPVNAGEIMK+NPGHYVALLISTK+C S++T+   RRRD++ QTN+TNFNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS
        T QDVLQGLKAKQEAK KRN +DFEGK GN EKGSEGE+NQGMK E+NR       VS+AAKSRGWQPSLQSISE GS
Subjt:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS

XP_022923864.1 uncharacterized protein LOC111431455 [Cucurbita moschata]1.9e-89100Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
        NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

XP_023000947.1 uncharacterized protein LOC111495231 [Cucurbita maxima]8.7e-8797.66Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA +RRRD DIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
        NQDVLQGLKAKQEAKMKRNS+DFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

XP_023519579.1 uncharacterized protein LOC111782953 [Cucurbita pepo subsp. pepo]4.2e-8999.42Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
        NQDVLQGLKAKQEAKMKRNS+DFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

TrEMBL top hitse value%identityAlignment
A0A0A0LU27 Uncharacterized protein1.9e-7182.02Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAIDTASLIIQHPNGKVDR YWPVNAGEIMK+NPGHYVALLISTK+C S++T+   RRRD+D QTN+TNFNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS
        T QDVLQGLKAKQEAK KRN ++FEGK GN EKGSEGE+NQGMK E+NR       VS+AAKSRGWQPSLQSISE GS
Subjt:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS

A0A1S3AV95 uncharacterized protein LOC1034833168.5e-7282.02Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAIDTASLIIQHPNGKVDR YWPVNAGEIMK+NPGHYVALLISTK+C S++T+   RRRD++ QTN+TNFNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS
        T QDVLQGLKAKQEAK KRN +DFEGK GN EKGSEGE+NQGMK E+NR       VS+AAKSRGWQPSLQSISE GS
Subjt:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS

A0A5D3BH89 Uncharacterized protein8.5e-7282.02Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAIDTASLIIQHPNGKVDR YWPVNAGEIMK+NPGHYVALLISTK+C S++T+   RRRD++ QTN+TNFNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA-GDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS
        T QDVLQGLKAKQEAK KRN +DFEGK GN EKGSEGE+NQGMK E+NR       VS+AAKSRGWQPSLQSISE GS
Subjt:  TNQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNR------AVSSAAKSRGWQPSLQSISEAGS

A0A6J1E7K0 uncharacterized protein LOC1114314559.0e-90100Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
        NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

A0A6J1KF34 uncharacterized protein LOC1114952314.2e-8797.66Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTA +RRRD DIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
        NQDVLQGLKAKQEAKMKRNS+DFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10530.1 unknown protein4.4e-2840.35Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQA++ A L++QHP G +DR+Y  V+  E+M   PGHYV+L+I       K+     + D   Q       +VR TR++LL+PT++LVLG  YRL+T
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
        +Q+V++ L+ K+ AK K++ ++              E  QG +    R  +S  KS+ W+PSLQSISEA S
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

AT1G60010.1 unknown protein7.0e-3445.6Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLI--STKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRL
        MGNCQA+D A+L++QHP+GK+DR+Y PV+  EIM+  PGHYV+L+I    K  P+ +T  D + +  +         VR TR+KLL+PT++LVLG  YRL
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLI--STKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRL

Query:  VTNQDVLQGLKAKQEAKMKRNSMDF--EGKDGNLEK--GSEGEMNQGM--KCEKNRAV---SSAAKSRGWQPSLQSISEAGS
        +T+Q+V++ L+AK+ AK K++  +   E K  + EK    E + NQ +  K EK R+V   S++++S+ W+PSLQSISEA S
Subjt:  VTNQDVLQGLKAKQEAKMKRNSMDF--EGKDGNLEK--GSEGEMNQGM--KCEKNRAV---SSAAKSRGWQPSLQSISEAGS

AT5G50090.1 unknown protein5.0e-3246.93Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQA+DTA ++IQHPNGK ++   PV+A  +MK NPGH V+LLIST    S S+               +   +RLTRIKLL+PTD+LVLG +YRL+T
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLE--------KGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
         ++V++GL AK+ +K+K+ S   +G D  LE        K    +  Q  K EK R    +  SR WQPSLQSISE GS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLE--------KGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

AT5G50090.2 unknown protein3.8e-3246.86Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQA+DTA ++IQHPNGK ++   PV+A  +MK NPGH V+LLIST    S S+               +   +RLTRIKLL+PTD+LVLG +YRL+T
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEK----GSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS
         ++V++GL AK+ +K+K+ S   +G D  LE      S    N+  + E++R       SR WQPSLQSISE GS
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNLEK----GSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS

AT5G62900.1 unknown protein2.8e-2739.01Show/hide
Query:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT
        MGNCQA + A+ +IQ P+GK  RFY  VNA E++KS+PGH+VALL+S+ +                     +  S+R+TRIKLL+P+D+L+LG +YRL++
Subjt:  MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVT

Query:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNL-------EKGSEGEMNQGMKCEKNRAVSSAA----KSRGWQPSLQSISEAGS
        +++V++G++AK+  KMK+   +F   +  +       E  S+ +  + +  EK R + +      K R WQPSLQSISE+ S
Subjt:  NQDVLQGLKAKQEAKMKRNSMDFEGKDGNL-------EKGSEGEMNQGMKCEKNRAVSSAA----KSRGWQPSLQSISEAGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATTGCCAAGCCATTGACACAGCATCTCTAATCATCCAACACCCAAACGGAAAAGTCGACCGATTTTACTGGCCGGTAAACGCCGGCGAGATCATGAAGTCAAA
TCCCGGGCATTACGTCGCCCTTCTCATCTCCACCAAAATCTGTCCATCAAAATCCACCGCCGGAGACCGCCGCCGTGATCATGACATCCAAACAAACACCACAAATTTCA
ACTCGGTCCGATTAACCCGAATCAAGCTTCTCAAGCCGACCGATTCCCTCGTTCTCGGCCAAATTTACCGCCTTGTAACAAACCAAGATGTGTTGCAGGGTTTGAAAGCG
AAACAGGAAGCGAAAATGAAGAGAAATTCGATGGATTTTGAAGGGAAAGATGGAAATTTGGAGAAGGGATCAGAAGGAGAAATGAATCAGGGGATGAAATGTGAGAAAAA
CAGAGCAGTGTCGTCGGCGGCGAAATCGAGAGGGTGGCAGCCTTCTCTGCAGAGCATTTCCGAGGCCGGAAGTTGA
mRNA sequenceShow/hide mRNA sequence
TTCTTCTTCCTCTTCAACCTCGCCTCTGTATTTTAGAGAGAGAAACAGAGTACCAGTAGAGAGAGAAGCTAACCAAAAACGAAACCCGATGGGAAATTGCCAAGCCATTG
ACACAGCATCTCTAATCATCCAACACCCAAACGGAAAAGTCGACCGATTTTACTGGCCGGTAAACGCCGGCGAGATCATGAAGTCAAATCCCGGGCATTACGTCGCCCTT
CTCATCTCCACCAAAATCTGTCCATCAAAATCCACCGCCGGAGACCGCCGCCGTGATCATGACATCCAAACAAACACCACAAATTTCAACTCGGTCCGATTAACCCGAAT
CAAGCTTCTCAAGCCGACCGATTCCCTCGTTCTCGGCCAAATTTACCGCCTTGTAACAAACCAAGATGTGTTGCAGGGTTTGAAAGCGAAACAGGAAGCGAAAATGAAGA
GAAATTCGATGGATTTTGAAGGGAAAGATGGAAATTTGGAGAAGGGATCAGAAGGAGAAATGAATCAGGGGATGAAATGTGAGAAAAACAGAGCAGTGTCGTCGGCGGCG
AAATCGAGAGGGTGGCAGCCTTCTCTGCAGAGCATTTCCGAGGCCGGAAGTTGAGGGTTCGAGATTTCCGATCAAGAAGATATAAAAATGAACAGAAAATGGGTTATTTT
TCAGGAGTTTTTAGACTCAGATTTGTGCATATGTAAGGAATAGTTCATTACAGAAACAGAGCAGAGAGAGAGAGAAAAAAAAACAGGGGATGAAGGG
Protein sequenceShow/hide protein sequence
MGNCQAIDTASLIIQHPNGKVDRFYWPVNAGEIMKSNPGHYVALLISTKICPSKSTAGDRRRDHDIQTNTTNFNSVRLTRIKLLKPTDSLVLGQIYRLVTNQDVLQGLKA
KQEAKMKRNSMDFEGKDGNLEKGSEGEMNQGMKCEKNRAVSSAAKSRGWQPSLQSISEAGS