; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G009810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G009810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr13:8398462..8400108
RNA-Seq ExpressionCmoCh13G009810
SyntenyCmoCh13G009810
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584277.1 hypothetical protein SDJN03_20209, partial [Cucurbita argyrosperma subsp. sororia]2.6e-17100Show/hide
Query:  MQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIH
        MQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIH
Subjt:  MQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIH

TYJ99083.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]9.3e-1577.05Show/hide
Query:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ LE YSFM   GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

XP_004137641.1 pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]8.5e-1678.69Show/hide
Query:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ+LE YSFM H GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

XP_022137264.1 pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]4.5e-1781.67Show/hide
Query:  MQIHRFSPSSSFI---LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQ HRFSPSS FI   LYLWNLMIRSSVNGGFFA+ LE YSFM H GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI---LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

XP_038893873.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida]5.5e-1575.41Show/hide
Query:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQIHRFSPSS+ I    LYLWNL IR SVNGGFF + LE YSFM H GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

TrEMBL top hitse value%identityAlignment
A0A0A0LT91 Uncharacterized protein4.1e-1678.69Show/hide
Query:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ+LE YSFM H GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

A0A1S3BDP0 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like4.5e-1577.05Show/hide
Query:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ LE YSFM   GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

A0A371HKH0 Pentatricopeptide repeat-containing protein DOT4, chloroplastic (Fragment)2.4e-0868.18Show/hide
Query:  LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        LYLWNLMIR S N GFF+Q L  YS M H G+HGNN T+ LLLK
Subjt:  LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

A0A5D3BIG9 Pentatricopeptide repeat-containing protein4.5e-1577.05Show/hide
Query:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ LE YSFM   GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

A0A6J1C6R4 pentatricopeptide repeat-containing protein At2g13600-like2.2e-1781.67Show/hide
Query:  MQIHRFSPSSSFI---LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK
        MQ HRFSPSS FI   LYLWNLMIRSSVNGGFFA+ LE YSFM H GIHGNNFTF LLLK
Subjt:  MQIHRFSPSSSFI---LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTCATCAAGGTATACAATTGGGCTGAAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAG
AAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTT
TGCGCAAATCTTGCTTCGATCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTCATCAAGGTATACAATTGGGCTGAAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAG
AAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTT
TGCGCAAATCTTGCTTCGATCGGTGA
Protein sequenceShow/hide protein sequence
MLFIKVYNWAEGSFAMQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLKPLRKSCFDR