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CmoCh13G009840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G009840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPectinesterase
Genome locationCmo_Chr13:8405851..8408185
RNA-Seq ExpressionCmoCh13G009840
SyntenyCmoCh13G009840
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584283.1 hypothetical protein SDJN03_20215, partial [Cucurbita argyrosperma subsp. sororia]1.9e-1176.79Show/hide
Query:  LSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF
        L+L KE LRALRA QELLNASDEKNFG EDK +DAATED KK V  NNF+ ISITF
Subjt:  LSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF

XP_022923663.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]4.6e-0558.73Show/hide
Query:  SISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITFLN
        S+    +  KERLRALRAAQELLNASDEKN G EDKE + ATEDP+ P   N    +S+ F N
Subjt:  SISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITFLN

XP_022923666.1 uncharacterized protein LOC111431307 isoform X1 [Cucurbita moschata]6.2e-1877.78Show/hide
Query:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF
        MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNAS           DDAATEDPKK V  NNF+ ISITF
Subjt:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF

XP_022923667.1 uncharacterized protein LOC111431307 isoform X2 [Cucurbita moschata]6.2e-1877.78Show/hide
Query:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF
        MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNAS           DDAATEDPKK V  NNF+ ISITF
Subjt:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF

XP_023520254.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]1.3e-0457.14Show/hide
Query:  SISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITFLN
        S+    +  KERLRALRAAQELLN SDEKN G EDKE + ATEDP+ P   N    +S+ F N
Subjt:  SISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITFLN

TrEMBL top hitse value%identityAlignment
A0A6J1E6R4 Pectinesterase3.0e-1877.78Show/hide
Query:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF
        MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNAS           DDAATEDPKK V  NNF+ ISITF
Subjt:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF

A0A6J1E719 coiled-coil domain-containing protein 12-like2.2e-0558.73Show/hide
Query:  SISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITFLN
        S+    +  KERLRALRAAQELLNASDEKN G EDKE + ATEDP+ P   N    +S+ F N
Subjt:  SISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITFLN

A0A6J1E7D8 Pectinesterase3.0e-1877.78Show/hide
Query:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF
        MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNAS           DDAATEDPKK V  NNF+ ISITF
Subjt:  MSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNASDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGCCGTCGCCTCTCCCTCCGATTCGTTTCCGACGCCCATAATCCTTCTCAAATCTCGTAAATCCAAAGTGATTACAAATCCTCAAACCTTTCCCCTAATCCATCA
GAGGGCGCTTGTGGGTCTCAATCGGGAAGTTTCTGGCCGATCCCTCGATAATGGGCTACTCGAGCTTCAACTGGTGTTCCTGAGTTCGAAGGTCTCTGTTTCGCCGGCGT
TTATGTCCGACCACATTAAAGTGTTCGTCTTCCACTCCATTTCGTGGTTCCTGTCTTTGAGCAAAGAGCGATTGAGAGCTCTAAGAGCTGCTCAGGAATTATTAAACGCT
TCAGATGAGAAGAACTTTGGAAGAGAGGATAAAGAGGATGATGCTGCTACTGAAGATCCGAAGAAACCTGTGGGTGTCAACAACTTCATAGCTATTTCTATTACGTTTTT
AAACACGGCCATGCAGTTGCTCTTCTGCTCTTCTGAACAGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGCCGTCGCCTCTCCCTCCGATTCGTTTCCGACGCCCATAATCCTTCTCAAATCTCGTAAATCCAAAGTGATTACAAATCCTCAAACCTTTCCCCTAATCCATCA
GAGGGCGCTTGTGGGTCTCAATCGGGAAGTTTCTGGCCGATCCCTCGATAATGGGCTACTCGAGCTTCAACTGGTGTTCCTGAGTTCGAAGGTCTCTGTTTCGCCGGCGT
TTATGTCCGACCACATTAAAGTGTTCGTCTTCCACTCCATTTCGTGGTTCCTGTCTTTGAGCAAAGAGCGATTGAGAGCTCTAAGAGCTGCTCAGGAATTATTAAACGCT
TCAGATGAGAAGAACTTTGGAAGAGAGGATAAAGAGGATGATGCTGCTACTGAAGATCCGAAGAAACCTGTGGGTGTCAACAACTTCATAGCTATTTCTATTACGTTTTT
AAACACGGCCATGCAGTTGCTCTTCTGCTCTTCTGAACAGTGGTAGTGTGAATCTTCTACAAGATTGTAGAATTTACGCCAGACTACTAAATAACATTGTTAGAGTGACT
GCATAGTCGGAAGAAAGTATACAACAATTGAGTGGCTTTTTGTTTCAGGATTTCACTGTAATTTTCATGAAATCATTTCTAAACTCAGTGGTGAATCTTGCCGGATGGTC
AGAATGGTCTAATAGTAGTTCTCTGAAATTATTATTTTATAGTGAGTATGGCAACAGAGGGCCGGGGGCTAACTTATCCGGAAGAGTCAAATGGCCAGGATTCCATGCAA
TAGAGAATCGAAAAAAAGCCATTCAATTCACTGTACGACAATTTATTAATGGGCTACATGGTTGCTAGAAATTGGTATACCATATAGACCAGTAATATAGATATGTGTGA
CATGACATGCAATAAAAGTTACATGGATACCAGAAACTTGTGTACTATATAGACCAGATTTGTAATATAGATATGTGTAGACTAGATTTATAATATACACATTGTGTACT
CAATTATTTATTCTAATTTATTCTAATAAAATATTCTG
Protein sequenceShow/hide protein sequence
MLAVASPSDSFPTPIILLKSRKSKVITNPQTFPLIHQRALVGLNREVSGRSLDNGLLELQLVFLSSKVSVSPAFMSDHIKVFVFHSISWFLSLSKERLRALRAAQELLNA
SDEKNFGREDKEDDAATEDPKKPVGVNNFIAISITFLNTAMQLLFCSSEQW