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CmoCh13G009860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G009860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPectinesterase
Genome locationCmo_Chr13:8423515..8432372
RNA-Seq ExpressionCmoCh13G009860
SyntenyCmoCh13G009860
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584281.1 putative pectinesterase/pectinesterase inhibitor 39, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1137.23Show/hide
Query:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKELL
        +SLDGK DY +I AAIAA  NNS+SR +I  +   G  FE     +S+  + L          +  + S    +G                         
Subjt:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKELL

Query:  RALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITF--CAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY
                  N S    FG      D+AT     +V AN+F+ +SITF   AGA PKHG  VALLNS+  N+TVFYKCVFLGYQDTL+
Subjt:  RALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITF--CAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY

KAG6584283.1 hypothetical protein SDJN03_20215, partial [Cucurbita argyrosperma subsp. sororia]2.4e-2093.22Show/hide
Query:  HISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCA
        ++++GKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCA
Subjt:  HISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCA

XP_022923666.1 uncharacterized protein LOC111431307 isoform X1 [Cucurbita moschata]7.9e-3280.21Show/hide
Query:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNL
        +S+ KE LRALRA QELLNASD           DAATED KKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY +
Subjt:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNL

XP_022923667.1 uncharacterized protein LOC111431307 isoform X2 [Cucurbita moschata]2.3e-3984.11Show/hide
Query:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAEFE
        +S+ KE LRALRA QELLNASD           DAATED KKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAEFE
Subjt:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAEFE

Query:  SLTRHMA
        SLTRHMA
Subjt:  SLTRHMA

XP_022923776.1 pectinesterase-like [Cucurbita moschata]4.8e-1338.02Show/hide
Query:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKELL
        +SLDGK DY +I AAIAA  NNS+SR +I  +   G  FE     +S+  + L          +  + S    +G                         
Subjt:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKELL

Query:  RALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITF--CAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAE
                  N S    FG     +D+AT     +V ANNF+  SITF   AGA PKHG  +ALLNS+ VN+TVFYKCVFLGYQDTLY   E
Subjt:  RALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITF--CAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAE

TrEMBL top hitse value%identityAlignment
A0A5A7UNS3 Pectinesterase3.4e-0443.84Show/hide
Query:  DEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY
        D ++ G   K N++AT      V  NNF+  S+TF   A P++G  VA+   D  +HT +YKC FLG+QDTLY
Subjt:  DEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY

A0A6J1CR03 Pectinesterase4.0e-0531.25Show/hide
Query:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKE--
        +SLDG  D+ SI AAI+A  +NSNSR  I                                  R K                   +G    HI V  +  
Subjt:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKE--

Query:  ---LLRALRATQELL-NASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY
           L+    AT  ++ N S+   FG       A        V  NNF+  SITF   A P +G  VALLN D  N+  FY+CVFLGYQDT++
Subjt:  ---LLRALRATQELL-NASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY

A0A6J1E6R4 Pectinesterase1.1e-3984.11Show/hide
Query:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAEFE
        +S+ KE LRALRA QELLNASD           DAATED KKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAEFE
Subjt:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAEFE

Query:  SLTRHMA
        SLTRHMA
Subjt:  SLTRHMA

A0A6J1E7D8 Pectinesterase3.8e-3280.21Show/hide
Query:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNL
        +S+ KE LRALRA QELLNASD           DAATED KKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY +
Subjt:  ISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNL

A0A6J1E7N2 Pectinesterase2.3e-1338.02Show/hide
Query:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKELL
        +SLDGK DY +I AAIAA  NNS+SR +I  +   G  FE     +S+  + L          +  + S    +G                         
Subjt:  LSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVLTRHISVGKELL

Query:  RALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITF--CAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAE
                  N S    FG     +D+AT     +V ANNF+  SITF   AGA PKHG  +ALLNS+ VN+TVFYKCVFLGYQDTLY   E
Subjt:  RALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITF--CAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02810.1 Plant invertase/pectin methylesterase inhibitor superfamily1.1e-0447.06Show/hide
Query:  VAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY
        V A NFV ++ITF   A P+    VAL    G + ++FY C F  YQDTLY
Subjt:  VAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLY

AT1G23200.1 Plant invertase/pectin methylesterase inhibitor superfamily4.3e-0432.04Show/hide
Query:  AGVLTRHISVGKELLRALRATQELLNASDEKNFGGEDKVNDAAT--EDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQD
        AGV   ++ + K    +++    + +  D     G   V D  T        V+ N F+   ITF   A P+    VAL +S   + +VFY C F GYQD
Subjt:  AGVLTRHISVGKELLRALRATQELLNASDEKNFGGEDKVNDAAT--EDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQD

Query:  TLY
        TLY
Subjt:  TLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATTGTCCAGTATGGTGGAGATGGGTTGGCTGTTGAAGCTGGGCCGCTGGGCACGCGTATTATCCTTAGATGGAAAAGAAGACTACGTAAGCATCGATGCCGCTAT
AGCAGCGACACTGAATAACAGTAACTCTAGGTCGATGATAGTTGGTAATAGGAACCAAGGTACTGACTTTGAAACCTCAGATTCAGCCACTTCACAAGGAAGAATGTGCT
TGCATTGTAAGAAATTTGCAGCTCCCATTGAAAGAACCAAAAATCGCAGCCGCATGCGCGCGATGGGCCGCGAAGGCTGCAGAGAGAGCGCGCGATGGGCCGGAGTTCTT
ACACGCCATATTTCAGTAGGCAAAGAGCTATTGAGAGCTCTAAGAGCTACTCAGGAATTGTTAAACGCTTCAGATGAGAAGAACTTTGGAGGAGAGGATAAAGTGAATGA
TGCTGCTACTGAAGATCTGAAGAAACTTGTGGCTGCTAACAACTTTGTAACTATTTCCATTACGTTTTGTGCTGGAGCTATACCTAAACACGGCCATACAGTTGCTCTTC
TGAATAGTGATGGTGTGAATCATACCGTATTCTACAAATGCGTGTTTCTTGGCTATCAAGACACACTTTACAATCTTGCAGAGTTCGAAAGCCTGACGAGACATATGGCT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGCTATTGTCCAGTATGGTGGAGATGGGTTGGCTGTTGAAGCTGGGCCGCTGGGCACGCGTATTATCCTTAGATGGAAAAGAAGACTACGTAAGCATCGATGCCGCTAT
AGCAGCGACACTGAATAACAGTAACTCTAGGTCGATGATAGTTGGTAATAGGAACCAAGGTACTGACTTTGAAACCTCAGATTCAGCCACTTCACAAGGAAGAATGTGCT
TGCATTGTAAGAAATTTGCAGCTCCCATTGAAAGAACCAAAAATCGCAGCCGCATGCGCGCGATGGGCCGCGAAGGCTGCAGAGAGAGCGCGCGATGGGCCGGAGTTCTT
ACACGCCATATTTCAGTAGGCAAAGAGCTATTGAGAGCTCTAAGAGCTACTCAGGAATTGTTAAACGCTTCAGATGAGAAGAACTTTGGAGGAGAGGATAAAGTGAATGA
TGCTGCTACTGAAGATCTGAAGAAACTTGTGGCTGCTAACAACTTTGTAACTATTTCCATTACGTTTTGTGCTGGAGCTATACCTAAACACGGCCATACAGTTGCTCTTC
TGAATAGTGATGGTGTGAATCATACCGTATTCTACAAATGCGTGTTTCTTGGCTATCAAGACACACTTTACAATCTTGCAGAGTTCGAAAGCCTGACGAGACATATGGCT
TAAATCTGACCTCTTCAGCTGCTCCACAATGTACTTATAAGTATCCGAGGCATATGGAATGGAATGATTTATGAAAATAGTCAGGAGTCCTGTGAAGTTTGATTTCAAGT
CTGCACGAGGATCTGAAACTACCAAATCATAGCAAAATTTCCATTCTTCTTCTCCATTCTTCTTACGGGCGTCTCTGACAAAATCATCTGAGGCCACAGTTTGATGTATT
TGAGAAACTAGACACAAAAACTCAAAAGAAATAAAAAAGGGATACAAGAGAGTTTTTTCACCATCATGTTAGTTTTTTTTTCTTTTCTATTTCTCCACTTTGTACTCATT
TTTATAGGTAATAAATAACAACTTTGGAGTTCTTCTCCAAAGCTTGGTTTGGAAAGTTAATAATCATATATTTCTAGAAAAG
Protein sequenceShow/hide protein sequence
MLLSSMVEMGWLLKLGRWARVLSLDGKEDYVSIDAAIAATLNNSNSRSMIVGNRNQGTDFETSDSATSQGRMCLHCKKFAAPIERTKNRSRMRAMGREGCRESARWAGVL
TRHISVGKELLRALRATQELLNASDEKNFGGEDKVNDAATEDLKKLVAANNFVTISITFCAGAIPKHGHTVALLNSDGVNHTVFYKCVFLGYQDTLYNLAEFESLTRHMA