CuGenDBv2

Gene ID	CmoCh13G009890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	coiled-coil domain-containing protein 12-like
Genome location	Cmo_Chr13:8466778..8470334
RNA-Seq Expression	CmoCh13G009890
Synteny	CmoCh13G009890
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

4.7e-71

96.79

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATEDDSVEQVAAARKERLRALRAAQELLN SDEKNSGGEDKENGAT   EDPEETNLSMKFRNYVPHDKELQEGKLVPP LPKFEDPVATEPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

XP_022923663.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]

1.1e-75

100

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

XP_023520254.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

2.0e-74

98.72

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATEDDSVEQVAAARKERLRALRAAQELLN SDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPP LPKFEDPVATEPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

2.2e-65

91.03

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATE+DSVEQVAAAR+ERLRALRAAQELLNA DEK SGGEDKENGA     D EETNL MKFRNYVPHDKELQEGKL PP LPKFEDPVATEPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]

1.0e-65

91.67

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATE+DSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGAT    D EETNL+MKFRNYVPHDKELQEGKL PP LPKFEDPV TEP QLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN  E
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR08 Uncharacterized protein

4.6e-64

87.82

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGAT   ED +ETNL+MKFRNYVPHDKELQEGKL PP LPKFEDPV +EPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

A0A1S3ATB1 coiled-coil domain-containing protein 12

1.3e-63

88.46

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATE+DS EQVAAARKERL+ALRAAQELLNASDEKNS GEDKENGAT    D +ETNL+MKFRNYVPHDKELQEGKL PP LPKFEDPV TEPPQ KEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

A0A6J1E719 coiled-coil domain-containing protein 12-like

5.2e-76

100

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

1.6e-64

89.74

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATE+DSVEQVAAAR+ERLRALRAAQELLNA DEK SGGED+ENGA     D EE NL MKFRNYVPHDKELQEGKL PP LPKFEDPVATEPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

3.5e-64

89.1

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP
        MATE+DSVEQVAAAR+ERLRALR AQELLNA DEK SGGED+ENG      D EETNL MKFRNYVPHDKELQEGKL PP LPKFEDPVATEPPQLKEDP
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

1.1e-11

34.67

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Query:  VEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEE-----TNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPV------ATEPPQL
        +E+ A  RKERL+ALR           + +G +D+E+G  +  +  EE      +  ++ RNYVP D++L+  ++   +    E+ V      A   P +
Subjt:  VEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEE-----TNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPV------ATEPPQL

Query:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        +E    N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Subjt:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Q8WUD4 Coiled-coil domain-containing protein 12

3.0e-12

34.67

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Query:  VEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATE-----DPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPV------ATEPPQL
        +E+ A  RKERL+ALR           + +G +DKE+G  +     + E+  E +  ++ RNYVP D++L++ ++   +    E+ V      A   P +
Subjt:  VEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATE-----DPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPV------ATEPPQL

Query:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        +E    N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Subjt:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

8.8e-44

67.55

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Query:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPP--QLKE
        MA+ED+S+EQ AAARKE L+ALRAAQEL           E KE+G   + E  EE   +MKFRNYVP  KELQ+GKL PPELPKFEDP+   PP  + KE
Subjt:  MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPP--QLKE

Query:  DPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD
        DPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  DPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD

Sequences

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CDS sequence

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ATGGCTACTGAAGACGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGCGATTGAGAGCTCTAAGAGCTGCTCAGGAATTGTTAAACGCTTCAGATGAGAAAAACTC
TGGAGGAGAGGATAAAGAGAATGGTGCTACTGAAGATCCTGAAGATCCTGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGG
AGGGAAAGCTTGTTCCACCTGAATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAAC
TGGGATCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGA
AGGAGACGATGACCAAAATATTACAGAATGA

mRNA sequence

Show/hide mRNA sequence

GGACGAAACACTCACTTTCCTCCCGCCCTCCCGCCAAGGTCGAAACACTCGCTTTCCTCCCGCCATTGCTCGAAGCTTCTGAAGCAATTCTTGCGAGTACAAAGTTTGTG
AAGAATATTGCCATTCCTTTCGAGTTTTTCTGAAATGGCTACTGAAGACGACTCCGTCGAACAAGTTGCTGCAGCACGTAAAGAGCGATTGAGAGCTCTAAGAGCTGCTC
AGGAATTGTTAAACGCTTCAGATGAGAAAAACTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTGAAGATCCTGAAGATCCTGAAGAAACTAATCTTAGTATGAAATTT
CGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGAATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGA
TCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTA
TGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGATAATATGCCGCCCAAGTTATGAGTTCTCCAGTATTACAGTCGCAA
TATTCACTACTATTCCGACGGCTTTATGTCTCATATGGTCAGATTTTCTGTAACCTTTCTGATCATTCTTTGCCGCAAATCTTTTGCTTTTAATTTATCTATTGTGGCTC
TCATGGTGTTCCTTGACTAACTATGCCCCATAGCAGATCTCACACTGGATAGTGATTTGTGATTTGTACCTATGCTAAAAATTACTTTGTACTTCATCTTATCTTCATTT
TGAACCGTTTTCTTATTTTTTATCTGCTAGTTTATAATCTACAATGTACATTAATTTTGCTTCTGGTTTCAGTCAGACCTTTGCAAACGTTCCCAGTCCATTCAATTTCC
AGATGACGTCAAACCTGTAAGTATAGATGCAATTAAAAGGTTTTTGTATGATTATTGATAACT

Protein sequence

Show/hide protein sequence

MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSMKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDPFVNIAPKKPN
WDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

CmoCh13G009890 (gene) of Cucurbita moschata (Rifu) v1 genome