CuGenDBv2

Gene ID	CmoCh13G009910
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	CDT1 domain-containing protein
Genome location	Cmo_Chr13:8486865..8488228
RNA-Seq Expression	CmoCh13G009910
Synteny	CmoCh13G009910
Gene Ontology terms	GO:0007049 - cell cycle (biological process) GO:0050794 - regulation of cellular process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	IPR032054 - DNA replication factor Cdt1, C-terminal IPR038090 - DNA replication factor Cdt1, C-terminal WH domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6584288.1 CDT1-like protein b, partial [Cucurbita argyrosperma subsp. sororia]

6.3e-64

97.76

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT
        MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDI 
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT

Query:  ERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRL
        ERSEVEEQIEQLHELVPNWISKNLTPSGDVTF +
Subjt:  ERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRL

KAG7019881.1 CDT1-like protein a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-61

98.45

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT
        MTQTPEQLTPKKSMLPSSYVKTRKPANVGR CKAAKRVHDLSAMEGDNGALR+GVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT

Query:  ERSEVEEQIEQLHELVPNWISKNLTPSGD
        ERSEVEEQIEQLHELVPNWISKNLTPSGD
Subjt:  ERSEVEEQIEQLHELVPNWISKNLTPSGD

XP_008437096.1 PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis melo]

1.9e-36

57.76

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG +CK AKR  + S MEGDNG   LGV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGDVTF ++
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH

XP_008437112.1 PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis melo]

1.9e-36

57.76

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG +CK AKR  + S MEGDNG   LGV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGDVTF ++
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH

XP_038893531.1 CDT1-like protein a, chloroplastic [Benincasa hispida]

2.9e-37

58.18

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGV--------AEKKASVD----------------------VKNVVRV
        MTQTP QLTPK+SMLPSS VKTRKPA+VG +CK AKR  + S MEGDNG   L V         EKK  +D                      +  +VRV
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGV--------AEKKASVD----------------------VKNVVRV

Query:  VYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH
        VYNIFKSVNC+SI KEELVH+I+M+ LDITER EVE+QIEQL +LVPNWISK  TPSGDVTF ++
Subjt:  VYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQM9 CDT1 domain-containing protein

1.3e-35

56.1

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLG-----------------------------VAEKKASVDVKNVVRVV
        MTQTP QLTPK+SMLPSS VKTRKPA+VG +CK AKR  + S ME DNG   LG                             V  +++S  +  +V VV
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLG-----------------------------VAEKKASVDVKNVVRVV

Query:  YNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH
        YNIFKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGDVTF ++
Subjt:  YNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH

A0A1S3AT80 CDT1-like protein a, chloroplastic isoform X2

9.2e-37

57.76

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG +CK AKR  + S MEGDNG   LGV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGDVTF ++
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH

A0A1S3ATS0 CDT1-like protein a, chloroplastic isoform X1

9.2e-37

57.76

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG +CK AKR  + S MEGDNG   LGV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGDVTF ++
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH

A0A5D3BIY5 CDT1-like protein a

9.2e-37

57.76

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG +CK AKR  + S MEGDNG   LGV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGDVTF ++
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRLH

A0A6J1GR86 CDT1-like protein a, chloroplastic

1.9e-34

56.52

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGV--------AEKK-------------------ASVDVKNVVRVVYN
        +TQTP Q TPK+SMLPSS VK RK A+VG LCK AKR  + S MEGDNG L   V         EK+                    S  +  +VRV+YN
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGV--------AEKK-------------------ASVDVKNVVRVVYN

Query:  IFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRL
        +FKSVNCASI KEELVH+I+M+SLDITER EVEE+IEQL + VP+WISK LTPSGDVTF +
Subjt:  IFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFRL

SwissProt top hits

e value

%identity

Alignment

Q9M1S9 CDT1-like protein b

2.1e-09

35.29

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Query:  SAMEGDNGA-----LRLGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFR
        S  EGDN +     L+  +   K   +  N   +V +++ +F S N   I KEEL+++I+ + ++IT+R EVEEQ+  + +LVP+WIS+    SGD+  R
Subjt:  SAMEGDNGA-----LRLGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFR

Query:  LH
        ++
Subjt:  LH

Q9SJW9 CDT1-like protein a, chloroplastic

3.2e-10

37.5

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Query:  AKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDV
        A +  +  A+E  N A+ L    +K    +  +  V++ + +S+    I KEELVH+I+    DIT+R EVEEQ+  L E+VP W+S+  + SGDV
Subjt:  AKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDV

Arabidopsis top hits

e value

%identity

Alignment

AT2G31270.1 homolog of yeast CDT1 A

2.3e-11

37.5

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Query:  AKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDV
        A +  +  A+E  N A+ L    +K    +  +  V++ + +S+    I KEELVH+I+    DIT+R EVEEQ+  L E+VP W+S+  + SGDV
Subjt:  AKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDV

AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B

1.5e-10

35.29

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Query:  SAMEGDNGA-----LRLGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFR
        S  EGDN +     L+  +   K   +  N   +V +++ +F S N   I KEEL+++I+ + ++IT+R EVEEQ+  + +LVP+WIS+    SGD+  R
Subjt:  SAMEGDNGA-----LRLGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGDVTFR

Query:  LH
        ++
Subjt:  LH

Sequences

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CDS sequence

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ATGACACAAACCCCAGAACAGTTGACACCAAAGAAATCAATGCTGCCGAGTTCGTACGTGAAAACGAGGAAACCCGCAAATGTGGGAAGATTATGTAAAGCTGCAAAACG
GGTTCACGACTTGTCTGCCATGGAAGGCGACAATGGTGCATTGAGGCTCGGCGTGGCTGAAAAGAAAGCTTCTGTTGATGTGAAGAATGTTGTTCGTGTTGTCTACAACA
TTTTCAAGTCTGTTAATTGCGCTTCGATTAACAAGGAAGAACTCGTGCACGAGATTATGATGAGTAGTCTTGATATTACTGAGAGAAGTGAAGTGGAAGAGCAAATTGAG
CAGCTCCATGAGTTGGTTCCCAATTGGATCTCCAAGAACTTGACACCTAGTGGGGATGTTACTTTTAGATTACATCTGTAG

mRNA sequence

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Protein sequence

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MTQTPEQLTPKKSMLPSSYVKTRKPANVGRLCKAAKRVHDLSAMEGDNGALRLGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIE
QLHELVPNWISKNLTPSGDVTFRLHL

CmoCh13G009910 (gene) of Cucurbita moschata (Rifu) v1 genome