; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G010040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G010040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein NRDE2 homolog isoform X1
Genome locationCmo_Chr13:8544060..8544781
RNA-Seq ExpressionCmoCh13G010040
SyntenyCmoCh13G010040
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR013633 - siRNA-mediated silencing protein NRDE-2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022923900.1 protein NRDE2 homolog isoform X1 [Cucurbita moschata]3.5e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

XP_022923901.1 protein NRDE2 homolog isoform X2 [Cucurbita moschata]3.5e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

XP_022923902.1 protein NRDE2 homolog isoform X3 [Cucurbita moschata]3.5e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

XP_022923903.1 protein NRDE2 homolog isoform X4 [Cucurbita moschata]3.5e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

XP_022923904.1 protein NRDE2 homolog isoform X5 [Cucurbita moschata]3.5e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

TrEMBL top hitse value%identityAlignment
A0A6J1E7E0 protein NRDE2 homolog isoform X31.7e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

A0A6J1E7N7 protein NRDE2 homolog isoform X51.7e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

A0A6J1E7Z6 protein NRDE2 homolog isoform X21.7e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

A0A6J1EAU9 protein NRDE2 homolog isoform X41.7e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

A0A6J1ED94 protein NRDE2 homolog isoform X11.7e-90100Show/hide
Query:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
        MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY
Subjt:  MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSY

Query:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
        ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR
Subjt:  ELLESSASDDDSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G17712.1 unknown protein1.3e-1341.07Show/hide
Query:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK
        LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +  ++EGG      +   +R Y L+E   S + D D  KRK
Subjt:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK

Query:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH
        + KKKKR+  N  +E +      SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Subjt:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH

AT3G17712.2 unknown protein1.3e-1341.07Show/hide
Query:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK
        LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +  ++EGG      +   +R Y L+E   S + D D  KRK
Subjt:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK

Query:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH
        + KKKKR+  N  +E +      SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Subjt:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH

AT3G17712.3 unknown protein1.3e-1341.07Show/hide
Query:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK
        LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +  ++EGG      +   +R Y L+E   S + D D  KRK
Subjt:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK

Query:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH
        + KKKKR+  N  +E +      SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Subjt:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH

AT3G17740.1 unknown protein1.3e-1341.07Show/hide
Query:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK
        LFP+   + N  S I    S+ PQWL N+SFTTDLSVIN A S+     PS S++ +  +  ++EGG      +   +R Y L+E   S + D D  KRK
Subjt:  LFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSAS-DDDSDHEKRK

Query:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH
        + KKKKR+  N  +E +      SRKS      D    +P KDYY D+  D DNLA+GS+YR N+ R+
Subjt:  KRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYR-NLKRH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCCAGCAGAAGAGGAGTTGCCACCTGAAGAGCAAAAGCCTAAAACCTCCCTCTTCCCGCTCCCGTTCGTCGCTAACAATCCCCAGAGTCAGATAAGTCCGCC
CAATTCAAGCGTTCCTCAGTGGCTTTGCAACTCCAGCTTCACCACTGACCTATCCGTCATCAACGATGCTCTTTCATCTCAAAACAATGTATATCCCTCCCTCTCCACCG
ATGGCGACCAGGAAGAGGCTGTGGAAGATGAAGGTGGTCCAAGTGTTAGACCTGAGGTACAGAAGTCATCTCGATCATACGAATTGCTGGAATCTTCTGCTTCGGACGAC
GACTCCGACCATGAGAAGAGGAAAAAGAGGAAGAAGAAGAAGAGGAGGAGGCGAAATGAATATGAAGAAAAAAAGGGATTCGGCGAGTATGGTTCGAGAAAGTCCGATGT
TCGGGCTTGGGCCGATGCTGCCGATGGTAGACCTTCCAAGGATTATTACTTCGATTCTAATGGAGACCGGGATAACTTAGCATTCGGGTCTCTTTACAGAAATTTGAAAA
GACATGCCGATAATTTAATCAGACAGAGTAGAATTCACCTAAGATATACATGTTGTTCTAATGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTCCAGCAGAAGAGGAGTTGCCACCTGAAGAGCAAAAGCCTAAAACCTCCCTCTTCCCGCTCCCGTTCGTCGCTAACAATCCCCAGAGTCAGATAAGTCCGCC
CAATTCAAGCGTTCCTCAGTGGCTTTGCAACTCCAGCTTCACCACTGACCTATCCGTCATCAACGATGCTCTTTCATCTCAAAACAATGTATATCCCTCCCTCTCCACCG
ATGGCGACCAGGAAGAGGCTGTGGAAGATGAAGGTGGTCCAAGTGTTAGACCTGAGGTACAGAAGTCATCTCGATCATACGAATTGCTGGAATCTTCTGCTTCGGACGAC
GACTCCGACCATGAGAAGAGGAAAAAGAGGAAGAAGAAGAAGAGGAGGAGGCGAAATGAATATGAAGAAAAAAAGGGATTCGGCGAGTATGGTTCGAGAAAGTCCGATGT
TCGGGCTTGGGCCGATGCTGCCGATGGTAGACCTTCCAAGGATTATTACTTCGATTCTAATGGAGACCGGGATAACTTAGCATTCGGGTCTCTTTACAGAAATTTGAAAA
GACATGCCGATAATTTAATCAGACAGAGTAGAATTCACCTAAGATATACATGTTGTTCTAATGGCTAA
Protein sequenceShow/hide protein sequence
MEAPAEEELPPEEQKPKTSLFPLPFVANNPQSQISPPNSSVPQWLCNSSFTTDLSVINDALSSQNNVYPSLSTDGDQEEAVEDEGGPSVRPEVQKSSRSYELLESSASDD
DSDHEKRKKRKKKKRRRRNEYEEKKGFGEYGSRKSDVRAWADAADGRPSKDYYFDSNGDRDNLAFGSLYRNLKRHADNLIRQSRIHLRYTCCSNG