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CmoCh13G010420 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G010420
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPoly(A) polymerase
Genome locationCmo_Chr13:8750119..8750695
RNA-Seq ExpressionCmoCh13G010420
SyntenyCmoCh13G010420
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0031123 - RNA 3'-end processing (biological process)
GO:0043631 - RNA polyadenylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004652 - polynucleotide adenylyltransferase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007012 - Poly(A) polymerase, central domain
IPR043519 - Nucleotidyltransferase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584337.1 Nuclear poly(A) polymerase 1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-48100Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

KAG7019926.1 Nuclear poly(A) polymerase 1 [Cucurbita argyrosperma subsp. argyrosperma]4.1e-48100Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

XP_022924013.1 nuclear poly(A) polymerase 1-like [Cucurbita moschata]4.1e-48100Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

XP_023001680.1 nuclear poly(A) polymerase 1-like [Cucurbita maxima]4.1e-48100Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

XP_023519640.1 nuclear poly(A) polymerase 1-like [Cucurbita pepo subsp. pepo]3.5e-4799.02Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEK LQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

TrEMBL top hitse value%identityAlignment
A0A498JLJ5 Polynucleotide adenylyltransferase3.5e-4594.12Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALS RNNGQRLGIT+PISL GPTEYDVIKTRELEKYLQDAGLYESQEEAV REEVLGRLDQIVK WVKTISRAKGLNEQLV EANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

A0A6J1EB53 Poly(A) polymerase2.0e-48100Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

A0A6J1GS98 Polynucleotide adenylyltransferase2.4e-4697.06Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPAL+GRNNGQRLGITDPISLSGPTE DVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVK ISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

A0A6J1K4A6 Polynucleotide adenylyltransferase1.6e-4596.08Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPAL+GRNNGQRLGITDPISLSGPTE DV KTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVK ISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

A0A6J1KLV3 Polynucleotide adenylyltransferase2.0e-48100Show/hide
Query:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
        MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL
Subjt:  MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRL

Query:  GV
        GV
Subjt:  GV

SwissProt top hitse value%identityAlignment
O82312 Nuclear poly(A) polymerase 22.5e-2460.92Show/hide
Query:  GITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        GIT+P+S++GP+  DV +  ELEK+L D GLYES+EE + REEV+ R+DQIVK WVK ++R +G  +Q+V++ANA IFTFGSYRLGV
Subjt:  GITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

P25500 Poly(A) polymerase alpha4.3e-1645.98Show/hide
Query:  GITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        GIT PISL+ P E D + T++L + L+  G++E +EE   R  +LG+L+ +VK W++ IS +K L + +++    KIFTFGSYRLGV
Subjt:  GITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

Q54J73 Poly(A) polymerase7.9e-1853.41Show/hide
Query:  LGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        LG+T+PIS + P+  D   + ELE  L    L+ES EE+  REE+LG+L+QIV+ W K +S  KG  EQ   E  AKIFTFGSYRLGV
Subjt:  LGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

Q8VYW1 Nuclear poly(A) polymerase 43.0e-2558.06Show/hide
Query:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        N+ +  GIT P+SL+GP+  D+ +  ELEKYL D GLYES+++ + REEVLGR+DQIVK WVK +++ +G  +Q+V++ANA IFTFGSYRLGV
Subjt:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

Q9LMT2 Nuclear poly(A) polymerase 11.5e-3779.17Show/hide
Query:  SGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        S + NGQR G+++PIS+ GPTE+DVIKTRELEK+LQD GLYES+EEAV REEVLG LDQIVK W+KTISRAKGLN+QL+ EANAKIFTFGSYRLGV
Subjt:  SGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

Arabidopsis top hitse value%identityAlignment
AT1G17980.1 poly(A) polymerase 11.1e-3879.17Show/hide
Query:  SGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        S + NGQR G+++PIS+ GPTE+DVIKTRELEK+LQD GLYES+EEAV REEVLG LDQIVK W+KTISRAKGLN+QL+ EANAKIFTFGSYRLGV
Subjt:  SGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

AT4G32850.2 nuclear poly(a) polymerase2.1e-2658.06Show/hide
Query:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        N+ +  GIT P+SL+GP+  D+ +  ELEKYL D GLYES+++ + REEVLGR+DQIVK WVK +++ +G  +Q+V++ANA IFTFGSYRLGV
Subjt:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

AT4G32850.3 nuclear poly(a) polymerase2.1e-2658.06Show/hide
Query:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        N+ +  GIT P+SL+GP+  D+ +  ELEKYL D GLYES+++ + REEVLGR+DQIVK WVK +++ +G  +Q+V++ANA IFTFGSYRLGV
Subjt:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

AT4G32850.5 nuclear poly(a) polymerase2.1e-2658.06Show/hide
Query:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        N+ +  GIT P+SL+GP+  D+ +  ELEKYL D GLYES+++ + REEVLGR+DQIVK WVK +++ +G  +Q+V++ANA IFTFGSYRLGV
Subjt:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV

AT4G32850.6 nuclear poly(a) polymerase2.1e-2658.06Show/hide
Query:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV
        N+ +  GIT P+SL+GP+  D+ +  ELEKYL D GLYES+++ + REEVLGR+DQIVK WVK +++ +G  +Q+V++ANA IFTFGSYRLGV
Subjt:  NNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGCCCTGCATTAAGTGGCCGGAATAACGGGCAGCGATTAGGCATTACTGATCCTATTTCGTTGAGTGGGCCGACGGAGTATGATGTGATAAAGACTCGC
GAACTCGAAAAGTATCTGCAAGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGGAGACTAGACCAGATTGTGAAGATTTGG
GTTAAAACAATTAGTCGTGCAAAGGGGTTGAATGAGCAACTGGTACAAGAAGCCAATGCTAAGATTTTCACGTTCGGTTCATATCGCTTAGGGGTACAGAACTGT
TTTACTCTTCGAGAGCTTTATTCTTTGAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGCCCTGCATTAAGTGGCCGGAATAACGGGCAGCGATTAGGCATTACTGATCCTATTTCGTTGAGTGGGCCGACGGAGTATGATGTGATAAAGACTCGC
GAACTCGAAAAGTATCTGCAAGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGGAGACTAGACCAGATTGTGAAGATTTGG
GTTAAAACAATTAGTCGTGCAAAGGGGTTGAATGAGCAACTGGTACAAGAAGCCAATGCTAAGATTTTCACGTTCGGTTCATATCGCTTAGGGGTACAGAACTGT
TTTACTCTTCGAGAGCTTTATTCTTTGAGAATTTGA
Protein sequenceShow/hide protein sequence
MGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGVQNC
FTLRELYSLRI