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CmoCh13G010460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G010460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S24/S35, mitochondrial
Genome locationCmo_Chr13:8764856..8766317
RNA-Seq ExpressionCmoCh13G010460
SyntenyCmoCh13G010460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584340.1 hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sororia]4.5e-7796.91Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        MKRAIWGAVF ACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNST+IENKDSLVDDD+SNEELKRKIDRFYEGDVESLP IFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
        KRKLSGKHGDADDELMKEIRQR+PGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

KAG7019929.1 hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-7796.91Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        MKRAIWGAVF ACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDD+SNEELKRKIDRFYEGD+ESLP IFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
        KRKLSGKHGDADDELMKEIRQR+PGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

XP_022924024.1 uncharacterized protein LOC111431572 [Cucurbita moschata]3.7e-79100Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
        KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

XP_023000953.1 uncharacterized protein LOC111495236 [Cucurbita maxima]6.8e-7394.38Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        MKRAIWGAVF ACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDD VSNEELKRKIDRFYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR
        KRKLSGKHGDADDELMKEI QR+PGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR

XP_023519890.1 uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]1.1e-7595.06Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        MKRAIWGAVFT CSRRVSISPLLQTLRSGPLLP FSVSI+SQSRCYS+GNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
        KRKLSGKHGDADDELMKEIRQR+PGEVEDFKDEEYDSDLSGELNE+DEEM+ED SEEEDRRV
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

TrEMBL top hitse value%identityAlignment
A0A1S3CEX3 uncharacterized protein LOC1034999291.5e-4669.33Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAI
        MKRA+WGAVF  CSR +S+SP L+T RS PLL  FSV      RCYSSGNDKYN LNST  +NKDSLVDDDVS EELKRKID+FYE GD +SLP IFEAI
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAI

Query:  LKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
        LKRKLSGKH DADDELMKEIRQR+PGE+EDFK EEYDS+L+ +            SEEED+R+
Subjt:  LKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

A0A5D3BIA4 Uncharacterized protein1.5e-4669.33Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAI
        MKRA+WGAVF  CSR +S+SP L+T RS PLL  FSV      RCYSSGNDKYN LNST  +NKDSLVDDDVS EELKRKID+FYE GD +SLP IFEAI
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYE-GDVESLPTIFEAI

Query:  LKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
        LKRKLSGKH DADDELMKEIRQR+PGE+EDFK EEYDS+L+ +            SEEED+R+
Subjt:  LKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

A0A6J1C5J6 uncharacterized protein LOC1110085963.8e-4567.66Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        M RA+W AVF   +R VSISP LQT  SG     F+V  S Q RCYSS NDKYNGLNSTT +N  S+VDDDVS EELKRKID+FYEGDVESLP+IFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDS-------SEEEDR
        KRKLSGKH  ADDELMKEIRQR+PG++EDFKD+E  SDL+G   E+DEE+ + S       SEEEDR
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDS-------SEEEDR

A0A6J1E804 uncharacterized protein LOC1114315721.8e-79100Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
        KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV

A0A6J1KP40 uncharacterized protein LOC1114952363.3e-7394.38Show/hide
Query:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL
        MKRAIWGAVF ACSRRVSI PLLQTLRSGPLLP FSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDD VSNEELKRKIDRFYEGDVESLPTIFEAIL
Subjt:  MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAIL

Query:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR
        KRKLSGKHGDADDELMKEI QR+PGEVEDFKDEEYDSDLSG+LNE+DEEM+EDSSEEEDR
Subjt:  KRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73770.1 FUNCTIONS IN: molecular_function unknown1.5e-0630.77Show/hide
Query:  LLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVED
        ++P F  +I S+   +SS +D   G  +          ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+M  +R+    +   
Subjt:  LLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVED

Query:  FKDEEYDSDLSGELNESDEEMKEDSSEEED
          D + D +  G  + SD +++ D   + D
Subjt:  FKDEEYDSDLSGELNESDEEMKEDSSEEED

AT1G73770.2 FUNCTIONS IN: molecular_function unknown1.5e-0630.77Show/hide
Query:  LLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVED
        ++P F  +I S+   +SS +D   G  +          ++ +S EELK++I  F  +G+ +++P +FEA++ RKLSGKH D+DDE+M  +R+    +   
Subjt:  LLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILKRKLSGKHGDADDELMKEIRQRVPGEVED

Query:  FKDEEYDSDLSGELNESDEEMKEDSSEEED
          D + D +  G  + SD +++ D   + D
Subjt:  FKDEEYDSDLSGELNESDEEMKEDSSEEED

AT3G18240.1 Ribosomal protein S24/S35, mitochondrial1.1e-1235.76Show/hide
Query:  CSRRVSISPLL--QTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTI--------ENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILK
        C+RR+ +SP +  Q   + P L   +   + + R +SS     +G NSTT           K  LV +DVSN+ELK +I++++ EG+ ++LP + EA+L+
Subjt:  CSRRVSISPLL--QTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTI--------ENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILK

Query:  RKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE
        R+L  KH + DDEL+++I + +P + +D KDE+++SD   E + +DEE+++
Subjt:  RKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE

AT3G18240.2 Ribosomal protein S24/S35, mitochondrial1.1e-1235.76Show/hide
Query:  CSRRVSISPLL--QTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTI--------ENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILK
        C+RR+ +SP +  Q   + P L   +   + + R +SS     +G NSTT           K  LV +DVSN+ELK +I++++ EG+ ++LP + EA+L+
Subjt:  CSRRVSISPLL--QTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTI--------ENKDSLVDDDVSNEELKRKIDRFY-EGDVESLPTIFEAILK

Query:  RKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE
        R+L  KH + DDEL+++I + +P + +D KDE+++SD   E + +DEE+++
Subjt:  RKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE

AT4G21460.1 Ribosomal protein S24/S35, mitochondrial1.4e-1236.71Show/hide
Query:  GAVF---TACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTI--------ENKDSLVDDDVSNEELKRKIDR-FYEGDVESLPT
        GA+F   + C+RR+ +S  +    + P L   +     + R +SS     +G NSTT          +K  LV +DVSN+ELK +ID+ F EG+ ++LP 
Subjt:  GAVF---TACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTI--------ENKDSLVDDDVSNEELKRKIDR-FYEGDVESLPT

Query:  IFEAILKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE
        + EA+L+R+L  KH + DDELM++I + +P + +D KDE+++SD   E + +DEE+++
Subjt:  IFEAILKRKLSGKHGDADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGAGCTATATGGGGAGCTGTCTTCACTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTGCGCTCTGGTCCATTACTACCTTCATTTTCCGT
TTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACAACGATTGAAAACAAGGATTCTCTCGTCGACGATGATGTCAGTA
ACGAAGAGCTGAAGAGGAAAATTGATAGATTTTATGAGGGTGACGTCGAGTCCTTACCAACAATTTTTGAAGCAATTTTGAAGAGGAAGCTATCAGGTAAGCACGGAGAT
GCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAGTGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGATTCAGATTTAAGTGGTGAGTTGAATGAAAGTGA
TGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAA
mRNA sequenceShow/hide mRNA sequence
GGGGATAAACCCTAGAACTGCGAAGAAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCACTGCCTGTTCTCGGAGGGTTTCCATCTCTCCTCTGCTTCAAACCTTG
CGCTCTGGTCCATTACTACCTTCATTTTCCGTTTCGATTTCGTCCCAATCGCGATGTTACTCGTCCGGGAATGACAAGTATAATGGATTGAACTCAACAACGATTGAAAA
CAAGGATTCTCTCGTCGACGATGATGTCAGTAACGAAGAGCTGAAGAGGAAAATTGATAGATTTTATGAGGGTGACGTCGAGTCCTTACCAACAATTTTTGAAGCAATTT
TGAAGAGGAAGCTATCAGGTAAGCACGGAGATGCTGATGATGAGCTGATGAAGGAAATTCGGCAGCGAGTGCCTGGAGAAGTTGAAGATTTTAAAGATGAAGAATATGAT
TCAGATTTAAGTGGTGAGTTGAATGAAAGTGATGAAGAAATGAAGGAGGATTCCAGTGAGGAAGAAGATAGAAGAGTATAAGTTAATGTTAGATCATACATTTTCGGGTG
GAAATGGTCAAATCTTGATAGCTTATTCAGGTTGGTCTATGGGAACCTCAACTCCTAACTTGGAGAACTTTGTTCCATGGGGAATTGTATGCTTTGTCTTTTAATGCCAA
AAATTTGCAATAGTGTATTGTTGTACAATTGTGTGGATGTGAGATTGAGATTGAACTTCTAACCTCAAGGGAAGAGAAGAAGTGCATACTAATTACTATTCACTTCAGCT
TCAT
Protein sequenceShow/hide protein sequence
MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTTIENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGD
ADDELMKEIRQRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSSEEEDRRV