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CmoCh13G010740 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G010740
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPeptidyl-tRNA hydrolase
Genome locationCmo_Chr13:8908412..8911914
RNA-Seq ExpressionCmoCh13G010740
SyntenyCmoCh13G010740
Gene Ontology termsGO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR001328 - Peptidyl-tRNA hydrolase
IPR018171 - Peptidyl-tRNA hydrolase, conserved site
IPR036416 - Peptidyl-tRNA hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584368.1 Peptidyl-tRNA hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4098.77Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMRSIIDHLRGSRDYPRWFYM
        MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMRSIIDHLRGSRDYPRWF+M
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMRSIIDHLRGSRDYPRWFYM

XP_008457243.1 PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo]6.0e-2288.33Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSS P TD  A+DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

XP_022136978.1 peptidyl-tRNA hydrolase, chloroplastic [Momordica charantia]2.7e-2288.33Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSSPP  D LAVDDKKP+PPPKPWLIVGLGNPGKKYD TRHN+GFEMVD VAEAEGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

XP_038893864.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida]1.6e-2290Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSS P TD L VDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

XP_038893867.1 peptidyl-tRNA hydrolase, mitochondrial isoform X2 [Benincasa hispida]1.6e-2290Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSS P TD L VDDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

TrEMBL top hitse value%identityAlignment
A0A0A0LVQ7 Uncharacterized protein8.5e-2286.67Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSS P T+  A+DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

A0A1S3C5R3 peptidyl-tRNA hydrolase, chloroplastic2.9e-2288.33Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSS P TD  A+DDKKPAPPPKPWLIVGLGNPGKKYDRTRHN+GFEMVD VAEAEGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

A0A6J1C906 peptidyl-tRNA hydrolase, chloroplastic1.3e-2288.33Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSSPP  D LAVDDKKP+PPPKPWLIVGLGNPGKKYD TRHN+GFEMVD VAEAEGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

A0A6J1K317 peptidyl-tRNA hydrolase, chloroplastic isoform X32.7e-2081.67Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSSP   D LAV++KKPAPPPKPWLIVGLGNPGKKY+RTRHN+GFEM+D VAE EGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

A0A6J1K5W5 peptidyl-tRNA hydrolase, chloroplastic-like isoform X32.7e-2081.67Show/hide
Query:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        MSTSSP   D LAV++KKPAPPPKPWLIVGLGNPGKKY+RTRHN+GFEM+D VAE EGIS
Subjt:  MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

SwissProt top hitse value%identityAlignment
Q10LI6 CRS2-like protein, chloroplastic1.6e-0964.1Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMR
        PWL VGLGNPG+KY  TRHN+GF+M+D  A+++GIS  R
Subjt:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMR

Q5N9Q7 Peptidyl-tRNA hydrolase, mitochondrial1.7e-1178.38Show/hide
Query:  KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        KPWL VGLGNPGK Y  TRHN+GFEM+D +AEAEGIS
Subjt:  KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

Q5ZCL8 Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic1.6e-0972.22Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        PWLI GLGNPG KY  TRHN+GFEMVD +A  EGI+
Subjt:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

Q8GW64 Peptidyl-tRNA hydrolase, chloroplastic3.1e-1364.52Show/hide
Query:  STSSPPITDHL-AVDDKKPAPPP--KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        S SS P ++ L A+   KP  PP   PWLIVGLGNPGKKY  TRHN+GFEMVD +A+AEGIS
Subjt:  STSSPPITDHL-AVDDKKPAPPP--KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

Q9LF14 Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic2.1e-0971.43Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI
        PWLIVGLGNPG KY  TRHN+GFEM+D +A  EG+
Subjt:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI

Arabidopsis top hitse value%identityAlignment
AT1G18440.1 Peptidyl-tRNA hydrolase family protein2.2e-1464.52Show/hide
Query:  STSSPPITDHL-AVDDKKPAPPP--KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        S SS P ++ L A+   KP  PP   PWLIVGLGNPGKKY  TRHN+GFEMVD +A+AEGIS
Subjt:  STSSPPITDHL-AVDDKKPAPPP--KPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

AT5G16140.1 Peptidyl-tRNA hydrolase family protein1.5e-1071.43Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI
        PWLIVGLGNPG KY  TRHN+GFEM+D +A  EG+
Subjt:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI

AT5G16140.2 Peptidyl-tRNA hydrolase family protein1.5e-1071.43Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI
        PWLIVGLGNPG KY  TRHN+GFEM+D +A  EG+
Subjt:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGI

AT5G38290.1 Peptidyl-tRNA hydrolase family protein3.3e-1072.22Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        PWLIVGLGNPG KY  TRHN+GFEM+D +A A  IS
Subjt:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS

AT5G38290.2 Peptidyl-tRNA hydrolase family protein3.3e-1072.22Show/hide
Query:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS
        PWLIVGLGNPG KY  TRHN+GFEM+D +A A  IS
Subjt:  PWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAA
GTATGATCGCACGCGCCATAATCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCTGAAGGGATTTCCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAG
ATTACCCACGCTGGTTCTATATGTGA
mRNA sequenceShow/hide mRNA sequence
GATCCAGAACCCTAACGAGTCCTTTTTCCAACATGTCTCTCACACTCTTTATCTATCCTTAGCCTTTGTCTTGGTTATACTCGGTTTAGCTTCAAAACCCACTCTTCTTT
CCCTCCTCGAACTTCGCATATCTTTTCGTCAACTTCTTCAATTACTGCGTCGATGTCTACTTCCTCGCCTCCGATCACCGATCATCTGGCTGTAGATGACAAGAAGCCCG
CGCCGCCGCCGAAGCCATGGCTCATCGTGGGCCTCGGGAATCCCGGGAAGAAGTATGATCGCACGCGCCATAATCTAGGTTTTGAGATGGTGGATCCTGTAGCTGAAGCT
GAAGGGATTTCCAGGATGAGGAGTATCATTGATCACTTGAGAGGCAGTCGAGATTACCCACGCTGGTTCTATATGTGATATCAGCTGATAAATGGGTGAAAGCATTCTAG
ACATCATATGGCGCCCTCCCGGGAAAATGGATGCTTCAATAAACAAGAACGAGATGAGGCATAAAGTTGTGATCTTTGAAGAGATCAATAAAGCTAAAAGCCTCACCCAC
CATGCAGCAAACCAAGCGATAAAAGTTGAGAAGGACAGGAATTGATAGAAGGGAGCTACCTCTACCTAACTTTAATTGCTTTAATTATCTCATCTTAGCAAATCACCAAC
GGAGGCTCTGTCTTTGCGCGTCTTGTCATCTTCTTCTCTATGCATTTCCTCTGTTGGGTGGCCCATGTTTTGTGTGTAATTTAACGGTTTGTCTGCCTGTGTTTTTCAGG
TTTCTGGTGAACACCTTCCCTATGGAATTGCCTCATACCAAGACGATTTCATGTAGCCTTGAACAACAAAGCTTCTACGTCTTCCTTTGATTCAATTCGCCTCTCCCATA
AAATATTTTCTTTAAACGTCAATTAACACCCACCCAGTTGTCGTTGTAAGCAGTGATATCAGGAAGCGGTGTGGGGTTGAAGAATCGAGAGGGAGAACTGATTGTCATAA
AATCTGTAGATAAGGCTTAGTTAGACACTTGTTGTGCAGCGCTCTGTTTCCATGGCCGCCCTCAACGTCCTCCATAAATGCAAAACCATCCTCAACTCCAACGCTTTACT
CCCTTCTTACGTCTGCTTGCCCTCTTCTTCCTTCTCCCTCTTATTTATTGTTATGGTTGAGCGGGAACTGAGCATTCTAGGTAAGAGTTAAGACATGAGTTTTGGCTATT
ACATATGGTATAGAGCAATACAGAGGTGTGTACTAGTGAGGACACTGACCTTCAAAAGAGTGGATTGTAAGCTTCCATGTCGGTTGGAGAGAGGAACGCAACATTCCTTT
AAGAATGTGGAAATCTCTCTCTAATAGACGTATTTTAAAATTGTAAGACGGAAAACATATAGATATGGTTTTATTTCATGACAGGAGACGATTGGAGTTCAAAATTGGAG
TTCAAAAAAGGGAGTAATGTCCCATTCAATTCAAACATTCACATGAAGGCACCGCCCCCATTGTTGTCTTTTCTTTTTTGTATTTATTTATTCCTATTCATAATAAGAAT
TCCCATGTGCCC
Protein sequenceShow/hide protein sequence
MSTSSPPITDHLAVDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNLGFEMVDPVAEAEGISRMRSIIDHLRGSRDYPRWFYM