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CmoCh13G011710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G011710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor PRE5-like
Genome locationCmo_Chr13:9370016..9370355
RNA-Seq ExpressionCmoCh13G011710
SyntenyCmoCh13G011710
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584448.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3293.83Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS
        MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTS TVS AE+LKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKHLL+
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS

KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-3295.06Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS
        MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTS TVS AE+LKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL+
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]1.3e-2174.67Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASS L D++L+NL+S+L+TLLPQLNH    S+  S  E+LKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]1.9e-2375Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL
        MASS L D++L+NL+S+L+TLLPQLNH    S+  S  E+LKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]1.1e-2680.25Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS
        MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  E+LKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVK LLS
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein5.2e-2780.25Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS
        MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  E+LKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVK LLS
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS

A0A1S3B0J1 transcription factor PRE5-like9.1e-2475Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL
        MASS L D++L+NL+S+L+TLLPQLNH    S+  S  E+LKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL

A0A2P5YWD3 BHLH domain-containing protein3.6e-1253.66Show/hide
Query:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGV---DFEMVKHLL
        AS+ + DD+L  L+ RL TLLPQLNH  H   + S  ++LKETC YI++LQ+EVDDLSERL + LDSM +   D E + +LL
Subjt:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGV---DFEMVKHLL

A0A5A7SZP9 Transcription factor PRE5-like9.1e-2475Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL
        MASS L D++L+NL+S+L+TLLPQLNH    S+  S  E+LKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL

A0A5D3BKI2 Transcription factor PRE5-like6.5e-2274.67Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASS L D++L+NL+S+L+TLLPQLNH    S+  S  E+LKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI78.8e-0845.71Show/hide
Query:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGV
        +++ + D+Q+ +L+S+LQ LLP+    L ++  V  A VL+ETC YI+ L REVDDLSERL + L +  V
Subjt:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGV

Q8GW32 Transcription factor PRE64.7e-0943.9Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLS
        SS + DDQ+ +L+S+LQ L+P+L      S  VS ++VL+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL+
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLS

Q9CA64 Transcription factor PRE35.2e-0851.67Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL
        +S + +DQ+ +L+ +LQ LLP+L  +   S  VS A VL++TC+YI+ L REVDDLSERL
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL

Q9LJX1 Transcription factor PRE51.6e-0948.57Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S + DDQ+ +L+S+L+  LP++ H    S  VS ++VL+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVD

Q9LXG5 Transcription factor PRE21.4e-0844.12Show/hide
Query:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS + DDQ+ +L+S+L+  +P++      S TVS ++VL+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.3e-1043.9Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLS
        SS + DDQ+ +L+S+LQ L+P+L      S  VS ++VL+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL+
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLS

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.7e-0951.67Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL
        +S + +DQ+ +L+ +LQ LLP+L  +   S  VS A VL++TC+YI+ L REVDDLSERL
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.1e-1048.57Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S + DDQ+ +L+S+L+  LP++ H    S  VS ++VL+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVD

AT3G47710.1 BANQUO 32.4e-0846.97Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDS
        +S + D+Q+ +L+ +L  LLP+L +    S  VS + VL+ETC YI+ L +EVDDLSERL + L+S
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDS

AT5G15160.1 BANQUO 29.6e-1044.12Show/hide
Query:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS + DDQ+ +L+S+L+  +P++      S TVS ++VL+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATCACC
GGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTG
AAATGGTTAAACATCTCCTCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCACCGTATCACC
GGCAGAGGTTTTGAAGGAGACGTGTGATTACATCAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTG
AAATGGTTAAACATCTCCTCAGTTGA
Protein sequenceShow/hide protein sequence
MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTTVSPAEVLKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLS