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CmoCh13G012010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G012010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At5g66520-like
Genome locationCmo_Chr13:9452464..9452823
RNA-Seq ExpressionCmoCh13G012010
SyntenyCmoCh13G012010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584474.1 Two-component response regulator-like APRR1, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6299.14Show/hide
Query:  MVEGILISSVRVTCLMKCLTQTSWVGNSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRVCPNGHCKLALSLLNQMKRAGVGGLHCQLVLNWDTSQWENG
        MVEGILISSVRVTCLMKCLTQTSWVGNSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRVCPNGHCKLALSLLNQMKRAGVGGLHCQLVL WDTSQWENG
Subjt:  MVEGILISSVRVTCLMKCLTQTSWVGNSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRVCPNGHCKLALSLLNQMKRAGVGGLHCQLVLNWDTSQWENG

Query:  FIGMLKEHGEGDIRKH
        FIGMLKEHGEGDIRKH
Subjt:  FIGMLKEHGEGDIRKH

KAG6607462.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]4.0e-0656.67Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +          +  NGHCKLALS+ NQM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV

XP_022948853.1 pentatricopeptide repeat-containing protein At5g66520-like isoform X1 [Cucurbita moschata]4.0e-0656.67Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +          +  NGHCKLALS+ NQM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV

XP_022997984.1 pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita maxima]4.0e-0656.67Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +          +  NGHCKLALS+ NQM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV

XP_023525439.1 pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita pepo subsp. pepo]4.0e-0656.67Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +          +  NGHCKLALS+ NQM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV

TrEMBL top hitse value%identityAlignment
A0A0A0LSS6 Uncharacterized protein2.8e-0555Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRV-----CPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +     +       NG CKLALSL +QM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRV-----CPNGHCKLALSLLNQMKRAGV

A0A5D3BIG1 Pentatricopeptide repeat-containing protein2.8e-0555Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRV-----CPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +     +       NG CKLALSL +QM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRV-----CPNGHCKLALSLLNQMKRAGV

A0A6J1C713 pentatricopeptide repeat-containing protein At5g66520-like2.8e-0554.69Show/hide
Query:  SWVGNSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV
        SW  NSLL G VRR DFDGA KV  +E P+ +             NGHCKLALSL +QM RAGV
Subjt:  SWVGNSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV

A0A6J1GB58 pentatricopeptide repeat-containing protein At5g66520-like isoform X11.9e-0656.67Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +          +  NGHCKLALS+ NQM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV

A0A6J1KD31 pentatricopeptide repeat-containing protein At5g66520-like1.9e-0656.67Show/hide
Query:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV
        NSLLAG VRR DFDGA KV  +E P+ +          +  NGHCKLALS+ NQM+RAGV
Subjt:  NSLLAGCVRRVDFDGAGKVLGEECPDMDYNG-----CRVCPNGHCKLALSLLNQMKRAGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGGGGATTCTGATATCGAGCGTGCGCGTTACATGTTTGATGAAATGCTTGACACAAACGTCGTGGGTTGGGAATTCCTTGCTCGCAGGCTGTGTTAGACGGGT
TGATTTTGATGGGGCTGGAAAAGTTCTGGGCGAGGAATGTCCCGACATGGACTACAATGGCTGCAGGGTTTGCCCAAATGGCCATTGTAAGCTAGCTTTGTCCCTACTTA
ATCAAATGAAAAGGGCTGGCGTTGGTGGGCTGCATTGTCAGCTTGTGCTGAATTGGGATACTTCACAGTGGGAAAATGGATTCATAGGTATGTTGAAAGAACATGGCGAA
GGAGACATCCGCAAGCATTGGTATCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGGGGATTCTGATATCGAGCGTGCGCGTTACATGTTTGATGAAATGCTTGACACAAACGTCGTGGGTTGGGAATTCCTTGCTCGCAGGCTGTGTTAGACGGGT
TGATTTTGATGGGGCTGGAAAAGTTCTGGGCGAGGAATGTCCCGACATGGACTACAATGGCTGCAGGGTTTGCCCAAATGGCCATTGTAAGCTAGCTTTGTCCCTACTTA
ATCAAATGAAAAGGGCTGGCGTTGGTGGGCTGCATTGTCAGCTTGTGCTGAATTGGGATACTTCACAGTGGGAAAATGGATTCATAGGTATGTTGAAAGAACATGGCGAA
GGAGACATCCGCAAGCATTGGTATCTCTGA
Protein sequenceShow/hide protein sequence
MVEGILISSVRVTCLMKCLTQTSWVGNSLLAGCVRRVDFDGAGKVLGEECPDMDYNGCRVCPNGHCKLALSLLNQMKRAGVGGLHCQLVLNWDTSQWENGFIGMLKEHGE
GDIRKHWYL