; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh14G002640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G002640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionvam6/Vps39-like protein
Genome locationCmo_Chr14:1191026..1192507
RNA-Seq ExpressionCmoCh14G002640
SyntenyCmoCh14G002640
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
InterPro domainsIPR001180 - Citron homology (CNH) domain
IPR032914 - Vam6/VPS39/TRAP1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577258.1 Vacuolar sorting protein 39, partial [Cucurbita argyrosperma subsp. sororia]1.0e-6697.06Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW

KAG7015348.1 Vam6/Vps39-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.0e-6697.06Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW

XP_022929405.1 vam6/Vps39-like protein [Cucurbita moschata]1.0e-6697.06Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW

XP_022984182.1 vam6/Vps39-like protein [Cucurbita maxima]1.0e-6697.06Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW

XP_023551827.1 vam6/Vps39-like protein isoform X1 [Cucurbita pepo subsp. pepo]1.0e-6697.06Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW

TrEMBL top hitse value%identityAlignment
A0A1S3BX35 vam6/Vps39-like protein3.0e-6492.09Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRYIEIRSL SPYALIQTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +  +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF

A0A5A7TMM2 Vam6/Vps39-like protein3.0e-6492.09Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRYIEIRSL SPYALIQTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +  +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF

A0A5D3D2H1 Vam6/Vps39-like protein3.0e-6492.09Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRYIEIRSL SPYALIQTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +  +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF

A0A6J1EUB2 vam6/Vps39-like protein5.0e-6797.06Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW

A0A6J1J1I5 vam6/Vps39-like protein5.0e-6797.06Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW
        LTASGNFEEALALCKLLPPEDSSLRSAKESSIHI +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISW

SwissProt top hitse value%identityAlignment
A4IG72 Transforming growth factor-beta receptor-associated protein 1 homolog5.0e-0833.63Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL+    +G+F +  G + Q   + WSE      +  PY +AL   ++ + S+     L QT+  R+G+ L D    +VV    + Y L P+PL  QI  
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALAL
        L AS   EEAL L
Subjt:  LTASGNFEEALAL

Q8L5Y0 Vacuolar sorting protein 395.7e-5272.66Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        L+ G +NIGVFVDQNGKLLQ  RICWSEAP+ +VIQ PYAIALLPR +E+R L SPY LIQTIVL+N R L+ SN+A++VGLDNS Y LFPV +GAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF
        LTASGNFEEALALCK+LPP++SSLR+AKESSIH  +  +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF

Q8R5L3 Vam6/Vps39-like protein6.8e-1333.59Show/hide
Query:  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLT
        G D++ V +++ G   Q+  + W++ P  +  Q PY +A+LPRY+EIR+L  P  L+Q+I L+  R +    ++ + V  ++  + L PVP+  QI QL 
Subjt:  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLT

Query:  ASGNFEEALALCKLLPPEDSSLRSAKESSIH
            FE AL L ++    DS     K+  IH
Subjt:  ASGNFEEALALCKLLPPEDSSLRSAKESSIH

Q8WUH2 Transforming growth factor-beta receptor-associated protein 18.6e-0833.91Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        LL+G   +G+F    G + Q   + WSE      +  PY IAL   +I + S+       QT+  + G  L D    ++V      Y L P+PL  QI  
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCK
        L AS   EEAL L K
Subjt:  LTASGNFEEALALCK

Q96JC1 Vam6/Vps39-like protein8.9e-1333.59Show/hide
Query:  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLT
        G D++ V +++ G   Q+  + W++ P  +  Q PY IA+LPRY+EIR+ + P  L+Q+I L+  R +    ++ + V  ++  + L PVP+  QI QL 
Subjt:  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLT

Query:  ASGNFEEALALCKLLPPEDSSLRSAKESSIH
            FE AL L ++    DS     K+  IH
Subjt:  ASGNFEEALALCKLLPPEDSSLRSAKESSIH

Arabidopsis top hitse value%identityAlignment
AT4G36630.1 Vacuolar sorting protein 394.0e-5372.66Show/hide
Query:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ
        L+ G +NIGVFVDQNGKLLQ  RICWSEAP+ +VIQ PYAIALLPR +E+R L SPY LIQTIVL+N R L+ SN+A++VGLDNS Y LFPV +GAQIVQ
Subjt:  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQ

Query:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF
        LTASGNFEEALALCK+LPP++SSLR+AKESSIH  +  +
Subjt:  LTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCAT
GGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTG
CTTTGTTGCCAAGATATATTGAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTG
GTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAA
GTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCAT
GGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTG
CTTTGTTGCCAAGATATATTGAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTG
GTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAA
GTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA
Protein sequenceShow/hide protein sequence
MPCVDNPGGQEKLFIYNQSHYKRYHSVESFLSLLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTIVLRNGRHLIDSNHAL
VVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRSAKESSIHISWMEFAVSPK