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CmoCh14G003110 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G003110
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationCmo_Chr14:1434109..1436073
RNA-Seq ExpressionCmoCh14G003110
SyntenyCmoCh14G003110
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580705.1 ABC transporter B family member 29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.6e-52100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

KAG7017463.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-5199.06Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_022935108.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]5.6e-52100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]2.1e-5198.11Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.8e-5198.11Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPF+LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

TrEMBL top hitse value%identityAlignment
A0A6J1CTX6 replication protein A 14 kDa subunit B1.5e-5096.23Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

A0A6J1F9M2 replication protein A 14 kDa subunit B-like2.7e-52100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

A0A6J1FQS1 replication protein A 14 kDa subunit B-like1.3e-4994.34Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

A0A6J1J6J3 replication protein A 14 kDa subunit B-like1.0e-5198.11Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

A0A6J1L034 replication protein A 14 kDa subunit B-like1.3e-4994.34Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B2.1e-3363.21Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        F+ LF+
Subjt:  FKPLFV

Q9LXK1 Replication protein A 14 kDa subunit A2.5e-3159.81Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

Q9SDK9 Replication protein A 14 kDa subunit3.4e-2852.83Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD  Q+T+KG+    +S +VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
         K LF+
Subjt:  FKPLFV

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein1.8e-3259.81Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein1.8e-3259.81Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.5e-3463.21Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        F+ LF+
Subjt:  FKPLFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCAT
ATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATAC
GAGCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATTTTGCCGCTCTCGAAAACCTGCGCTCTTTTTCCTCCGTCTCTCGCGGTTCGATTTCCATTTCCGACGAACTCCCCAGTTTCTGAATCAGATGGATACATCAAACCCTT
CAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCATATACGGTAAATCAACAGAT
GACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGACCAA
TTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGATATTCAAGCCAGACATTCATTGGCCGGA
AAGCTCAAACCCCTACCATCCCCTCCTGTGACACACTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTAGATTTATCGTTCATACAGTATTGAACTTCTCA
GGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAAATCTATTTTAATCGATTTTGTT
TTTAGCTTTTTAAGGTTATTATAAGGTTCTTAACTGCTAACTGAAACCCACAAACTGAAAATCCCTTCTGTTGTATCGACTGCATTGATCTGGGTAGAATTTTG
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV