CuGenDBv2

Gene ID	CmoCh14G003140
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	SRP54 domain-containing protein
Genome location	Cmo_Chr14:1441357..1441987
RNA-Seq Expression	CmoCh14G003140
Synteny	CmoCh14G003140
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6580706.1 hypothetical protein SDJN03_20708, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-37

93.14

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Query:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR
        MASSGRDGGVT+AAGSRFP  DGERELNP  NKHVDVDPISSEAAASL IKEQEKRKAAEEERNR KKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR
Subjt:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR

Query:  EN
        EN
Subjt:  EN

KAG7017465.1 hypothetical protein SDJN02_19330 [Cucurbita argyrosperma subsp. argyrosperma]

6.3e-37

92.16

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Query:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR
        MASSGRDGGVT+AAGSRFP  DGERELNP  NKHVDVDPISSEAAASL IKEQEKRKAAEEERNR KKMEA QTLKMPFIVSSVIAAVAVVAFAIVKNLR
Subjt:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR

Query:  EN
        EN
Subjt:  EN

XP_022935404.1 uncharacterized protein LOC111442294 [Cucurbita moschata]

1.3e-42

100

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Query:  MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE
        MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE
Subjt:  MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE

Query:  N
        N
Subjt:  N

XP_022983165.1 uncharacterized protein LOC111481798 [Cucurbita maxima]

1.4e-36

92.16

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Query:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR
        MASS RDGGVTNAAGSRFP  DGERELNPG NK VDVDPISSEAAASLVIKEQEKRKAAEEERNR KK EAMQTLKMPFIVSSVIAAVAVVAFAIVK LR
Subjt:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR

Query:  EN
        EN
Subjt:  EN

XP_023528882.1 uncharacterized protein LOC111791675 [Cucurbita pepo subsp. pepo]

7.2e-41

97.03

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Query:  MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE
        MASSGRDGGVTNAAGSRFPADGERELNPG NKHVDVDPISSEAAASLVIKEQEKRKAAEEERNR KK EAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE
Subjt:  MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE

Query:  N
        N
Subjt:  N

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CUK2 uncharacterized protein LOC111014362

1.0e-24

70.59

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Query:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR
        MAS G DGGV++AAGS FP AD +RELNPG N+HV+VDP+SSE A SL  KEQ KRKA EEER   KK + M+TLK  FIVS VIAAVAV AFAIVK LR
Subjt:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR

Query:  EN
        EN
Subjt:  EN

A0A6J1F5B5 uncharacterized protein LOC111442294

6.4e-43

100

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Query:  MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE
        MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE
Subjt:  MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE

Query:  N
        N
Subjt:  N

A0A6J1G5S8 uncharacterized protein LOC111451047

7.4e-23

66.99

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Query:  MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKA-AEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNL
        MAS GRDGG T  AGSRFPA D +REL+PG N+HV VDPISS+ AAS+  KEQ KRKA  EEER + KK + MQTLK  FIVS V+AAVAV AF +VK L
Subjt:  MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKA-AEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNL

Query:  REN
        R+N
Subjt:  REN

A0A6J1J505 uncharacterized protein LOC111481798

6.8e-37

92.16

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Query:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR
        MASS RDGGVTNAAGSRFP  DGERELNPG NK VDVDPISSEAAASLVIKEQEKRKAAEEERNR KK EAMQTLKMPFIVSSVIAAVAVVAFAIVK LR
Subjt:  MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLR

Query:  EN
        EN
Subjt:  EN

A0A6J1KYC8 uncharacterized protein LOC111498680

5.6e-23

67.96

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Query:  MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKA-AEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNL
        MAS GRDGG T  AGSRFPA D +REL+PG N+HV VDPISS+ AAS+  KEQ KRKA  EEER + KK + MQTLK  FIVS VIAAVAV AF +VK L
Subjt:  MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKA-AEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNL

Query:  REN
        R+N
Subjt:  REN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52620.1 unknown protein

7.5e-12

52.94

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Query:  FP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN
        FP  D E ELNPGQNK+ +VDP+SSE A+  V K  EKR+ A+ +R      +  +TLK   IVS+VI AVA  AFAI K L+EN
Subjt:  FP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN

Sequences

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CDS sequence

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ATGGCAAGCTCAGGCAGAGATGGCGGAGTAACCAATGCAGCAGGTTCCCGGTTTCCGGCGGACGGTGAGAGAGAGTTAAATCCCGGCCAAAACAAGCACGTTGACGTGGA
TCCCATTTCCTCGGAAGCTGCTGCATCTTTGGTTATTAAGGAGCAAGAGAAGAGAAAAGCAGCTGAAGAAGAACGAAACCGGGTGAAGAAGATGGAAGCGATGCAGACAT
TGAAGATGCCGTTCATCGTCTCCAGCGTCATCGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTGCGAGAAAACTGA

mRNA sequence

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Protein sequence

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MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN

CmoCh14G003140 (gene) of Cucurbita moschata (Rifu) v1 genome