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CmoCh14G004450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G004450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat superfamily protein
Genome locationCmo_Chr14:2122346..2123585
RNA-Seq ExpressionCmoCh14G004450
SyntenyCmoCh14G004450
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043706.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.1e-2651.33Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        +++GIIVG KLLE+EPENAG                                                           EVAKKVKELSIKFKEDGYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLALAFGLIATPEG TI +IK+LR+CVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

XP_008443096.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Cucumis melo]3.1e-2651.33Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        +++GIIVG KLLE+EPENAG                                                           EVAKKVKELSIKFKEDGYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLALAFGLIATPEG TI +IK+LR+CVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

XP_011652115.1 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Cucumis sativus]3.1e-2651.33Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        +++GIIVG KLLE+EPENAG                                                           EVAKKVKELSIKFKEDGYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLALAFGLIATPEG TI +IK+LR+CVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

XP_022154209.1 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Momordica charantia]2.2e-2450.65Show/hide
Query:  VVLLIKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDG
        V L + +GIIVG +LLEIEPENAG                                                           EVAKKVKELSIKFKEDG
Subjt:  VVLLIKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDG

Query:  YVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        YVP LSCVLYDV +E++EKVLLGHSEKLALAFGLIATP+ ATI +IK+LRVCVD
Subjt:  YVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

XP_038903310.1 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Benincasa hispida]4.8e-2752.67Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        +++GIIVG KLLEIEPENAG                                                           EVAKKVKELSIKFKEDGYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLALAFGLIATPEGATI +IK+LR+CVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

TrEMBL top hitse value%identityAlignment
A0A0A0LF47 DYW_deaminase domain-containing protein1.5e-2651.33Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        +++GIIVG KLLE+EPENAG                                                           EVAKKVKELSIKFKEDGYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLALAFGLIATPEG TI +IK+LR+CVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

A0A1S3B6T6 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial1.5e-2651.33Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        +++GIIVG KLLE+EPENAG                                                           EVAKKVKELSIKFKEDGYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLALAFGLIATPEG TI +IK+LR+CVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

A0A5A7TNQ9 Putative pentatricopeptide repeat-containing protein1.5e-2651.33Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        +++GIIVG KLLE+EPENAG                                                           EVAKKVKELSIKFKEDGYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLALAFGLIATPEG TI +IK+LR+CVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

A0A6J1DLD3 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial1.1e-2450.65Show/hide
Query:  VVLLIKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDG
        V L + +GIIVG +LLEIEPENAG                                                           EVAKKVKELSIKFKEDG
Subjt:  VVLLIKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDG

Query:  YVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        YVP LSCVLYDV +E++EKVLLGHSEKLALAFGLIATP+ ATI +IK+LRVCVD
Subjt:  YVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

A0A6J1ETZ1 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial3.1e-2449.33Show/hide
Query:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC
        + +GIIVG KLLEIEPENAG                                                           EVA+KVKEL+IKFKE+GYVP 
Subjt:  IKLGIIVGLKLLEIEPENAG----------------------------------------------------------VEVAKKVKELSIKFKEDGYVPC

Query:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        LSCVLYDV EE++EKVLLGHSEKLA+AF LIA PEGATI +IK+LRVCVD
Subjt:  LSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

SwissProt top hitse value%identityAlignment
O23169 Pentatricopeptide repeat-containing protein At4g371701.4e-1349.3Show/hide
Query:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        ++ + ++EL  K KE+GYVP  S VL+DV +E++E+ L+ HSEKLA+AF +++T EG  I + K+LR CVD
Subjt:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

P0C7R1 Pentatricopeptide repeat-containing protein DWY1, chloroplastic5.3e-1350.75Show/hide
Query:  KVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        K+K L  + ++ GYVP    VL+D+ EE +EK L+ HSE+LA+AFG+I TP G TI ++K+LR+C D
Subjt:  KVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

Q9LIC3 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial1.4e-2170.42Show/hide
Query:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        EV  K+KE+SIK K+ GYVP LSCVLYDV EE++EK+LLGHSEKLAL FGLIAT EG  I + K+LR+CVD
Subjt:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

Q9M4P3 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial3.1e-1352.86Show/hide
Query:  VAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        + KK+KEL  K K  GY P L   L++V EE++EK+LL HSEKLA+AFG I  P+G+ I + K+LR+C D
Subjt:  VAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

Q9ZUW3 Pentatricopeptide repeat-containing protein At2g276102.4e-1350.7Show/hide
Query:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        ++  K+++LS + K+ GY P  S VL D+ +E +E VL  HSE+LA+AFGLIATP+G+ + +IK+LRVC D
Subjt:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

Arabidopsis top hitse value%identityAlignment
AT1G47580.1 Pentatricopeptide repeat (PPR) superfamily protein3.8e-1450.75Show/hide
Query:  KVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        K+K L  + ++ GYVP    VL+D+ EE +EK L+ HSE+LA+AFG+I TP G TI ++K+LR+C D
Subjt:  KVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.7e-1450.7Show/hide
Query:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        ++  K+++LS + K+ GY P  S VL D+ +E +E VL  HSE+LA+AFGLIATP+G+ + +IK+LRVC D
Subjt:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

AT3G13770.1 Pentatricopeptide repeat (PPR) superfamily protein9.9e-2370.42Show/hide
Query:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        EV  K+KE+SIK K+ GYVP LSCVLYDV EE++EK+LLGHSEKLAL FGLIAT EG  I + K+LR+CVD
Subjt:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

AT4G16835.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1452.86Show/hide
Query:  VAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        + KK+KEL  K K  GY P L   L++V EE++EK+LL HSEKLA+AFG I  P+G+ I + K+LR+C D
Subjt:  VAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD

AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein9.9e-1549.3Show/hide
Query:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD
        ++ + ++EL  K KE+GYVP  S VL+DV +E++E+ L+ HSEKLA+AF +++T EG  I + K+LR CVD
Subjt:  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGTTGTTGATTAAATTGGGCATAATAGTGGGTCTGAAGCTTCTAGAGATAGAGCCTGAAAATGCAGGGGTGGAGGTGGCAAAGAAGGTAAAGGAATTATCCAT
TAAATTCAAGGAAGACGGTTATGTTCCTTGTTTGAGCTGTGTTTTGTATGATGTGCACGAGGAACGGAGAGAGAAGGTGCTTCTAGGCCATAGTGAAAAGCTAGCTTTGG
CGTTTGGGTTGATTGCTACTCCTGAAGGAGCAACAATTCATCTCATAAAAAGCCTCCGAGTTTGCGTCGACGATTCTTCTGATCCTATTGAGTTTGGCATCAGAGCAGCT
GCTGCAATATTAAGAACATCAGCATTTCTTGTCGGCTTGGAGTCGAAACCAGTCAGGGTATCTGCTGCTGCCTGCTGGTGGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGTTGTTGATTAAATTGGGCATAATAGTGGGTCTGAAGCTTCTAGAGATAGAGCCTGAAAATGCAGGGGTGGAGGTGGCAAAGAAGGTAAAGGAATTATCCAT
TAAATTCAAGGAAGACGGTTATGTTCCTTGTTTGAGCTGTGTTTTGTATGATGTGCACGAGGAACGGAGAGAGAAGGTGCTTCTAGGCCATAGTGAAAAGCTAGCTTTGG
CGTTTGGGTTGATTGCTACTCCTGAAGGAGCAACAATTCATCTCATAAAAAGCCTCCGAGTTTGCGTCGACGATTCTTCTGATCCTATTGAGTTTGGCATCAGAGCAGCT
GCTGCAATATTAAGAACATCAGCATTTCTTGTCGGCTTGGAGTCGAAACCAGTCAGGGTATCTGCTGCTGCCTGCTGGTGGTGGTGA
Protein sequenceShow/hide protein sequence
MVVLLIKLGIIVGLKLLEIEPENAGVEVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVDDSSDPIEFGIRAA
AAILRTSAFLVGLESKPVRVSAAACWWW