CuGenDBv2

Gene ID	CmoCh14G004930
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	aladin
Genome location	Cmo_Chr14:2441002..2443622
RNA-Seq Expression	CmoCh14G004930
Synteny	CmoCh14G004930
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0005643 - nuclear pore (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001680 - WD40 repeat IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR045139 - Aladin

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7017619.1 Aladin [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-91

89.53

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

XP_022934085.1 aladin [Cucurbita moschata]

1.2e-91

89.53

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

XP_022983772.1 aladin [Cucurbita maxima]

1.2e-91

89.53

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

XP_023527318.1 aladin isoform X1 [Cucurbita pepo subsp. pepo]

1.2e-91

89.53

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

XP_023527319.1 aladin isoform X2 [Cucurbita pepo subsp. pepo]

1.2e-91

89.53

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B899 aladin

3.8e-88

84.82

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSP+GDYFFAAK DGTFYLWETN WTSEQWS+TSGFVTGAIWDP+GRMILLAFS+SSVLGSIHFASKPPSLVAHLL VDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYD+KRTPLICPSLIGFIRGPGDNPKP AFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

A0A5A7UJP0 Aladin

1.9e-87

84.74

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Query:  LGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEIT
        LGTPIRRGLGCVSTIKWSP+GDYFFAAK DGTFYLWETN WTSEQWS+TSGFVTGAIWDP+GRMILLAFS+SSVLGSIHFASKPPSLVAHLL VDLPEIT
Subjt:  LGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEIT

Query:  TLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYD+KRTPLICPSLIGFIRGPGDNPKP AFSFHG
Subjt:  TLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

A0A6J1DEW4 aladin isoform X2

3.4e-89

85.34

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Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSP+GDYFFAAK DGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFS+SSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    S+GIEKIAWD SGERLAVSFKDGDELYNGLIAVYD+KRTPL+CPSLIGFIRGPGDNPKP AFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

A0A6J1F6N8 aladin

5.6e-92

89.53

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

A0A6J1J094 aladin

5.6e-92

89.53

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
        GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEI

Query:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
        TTLTN                    SQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG
Subjt:  TTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHG

SwissProt top hits

e value

%identity

Alignment

Q8GWR1 Aladin

3.2e-68

65.1

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP
        G GTPIRRGLG +S +KWSP+GDYFFAA+ DGTF LWETNTWTSE WS +  SG VTGAIWDP+GR IL++FS+SS LGS+HF+SKPPSL AHLL V+LP
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP

Query:  EITTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFH
        EI +LT                      +GIEKIAWDASGERLAVS+K GDE Y GLIA+YD +RTP++  SL+GFIRGPG+NPK  +FSFH
Subjt:  EITTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFH

Q9W351 Aladin

2.3e-10

32.43

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETN-TWTSEQW-STTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP
        G+  P++R     S +KWSP  D+ FAA +D  F +W  +  WT+E+W     G+V  A W P GR +L   S   +L  + F  +  SL++   + D  
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETN-TWTSEQW-STTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP

Query:  EITTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFK
        EI  + +    +   N    T V  P  Q    +AWD  G  L V+FK
Subjt:  EITTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFK

Arabidopsis top hits

e value

%identity

Alignment

AT3G56900.1 Transducin/WD40 repeat-like superfamily protein

2.3e-69

65.1

Show/hide

Query:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP
        G GTPIRRGLG +S +KWSP+GDYFFAA+ DGTF LWETNTWTSE WS +  SG VTGAIWDP+GR IL++FS+SS LGS+HF+SKPPSL AHLL V+LP
Subjt:  GLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTT--SGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLP

Query:  EITTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFH
        EI +LT                      +GIEKIAWDASGERLAVS+K GDE Y GLIA+YD +RTP++  SL+GFIRGPG+NPK  +FSFH
Subjt:  EITTLTNRPPMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFH

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCCAGGGTTGGGAACACCCATTAGGCGTGGATTAGGGTGTGTTTCAACAATCAAGTGGTCGCCTTCTGGAGATTACTTTTTTGCAGCAAAATTGGATGGAACATT
TTATCTTTGGGAAACGAACACATGGACATCTGAACAGTGGTCGACAACAAGTGGTTTTGTCACGGGAGCAATATGGGATCCTGATGGACGTATGATACTACTTGCTTTCT
CTGAGTCTTCAGTATTGGGTTCAATTCATTTTGCATCTAAGCCTCCGTCATTAGTTGCACATCTGCTAGCTGTTGACTTGCCGGAGATAACTACTTTGACGAACAGACCG
CCCATGACCAATATTGTTAACCATAAAATTTTGACAGCTGTGCATTATCCTTTCAGTCAGGGTATTGAGAAGATAGCATGGGATGCTTCAGGAGAGCGACTGGCTGTCTC
TTTCAAGGATGGAGATGAATTATATAATGGCCTGATCGCAGTATATGATATTAAAAGGACTCCCCTGATTTGTCCATCATTGATTGGCTTTATTAGAGGGCCTGGAGACA
ATCCAAAGCCAGCTGCATTTTCGTTCCATGGCAATGTTGGAGCAGCGGATTTTGCTGTACCTATCCTCTCATATTCCGCTCTCATGTTGTTCCTTAGTGGTGGTTCTCTT
GAGCCCTAG

mRNA sequence

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Protein sequence

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MVPGLGTPIRRGLGCVSTIKWSPSGDYFFAAKLDGTFYLWETNTWTSEQWSTTSGFVTGAIWDPDGRMILLAFSESSVLGSIHFASKPPSLVAHLLAVDLPEITTLTNRP
PMTNIVNHKILTAVHYPFSQGIEKIAWDASGERLAVSFKDGDELYNGLIAVYDIKRTPLICPSLIGFIRGPGDNPKPAAFSFHGNVGAADFAVPILSYSALMLFLSGGSL
EP

CmoCh14G004930 (gene) of Cucurbita moschata (Rifu) v1 genome