CuGenDBv2

Gene ID	CmoCh14G005180
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ribosomal RNA small subunit methyltransferase NEP1
Genome location	Cmo_Chr14:2608372..2610580
RNA-Seq Expression	CmoCh14G005180
Synteny	CmoCh14G005180
Gene Ontology terms	GO:0070475 - rRNA base methylation (biological process) GO:0005730 - nucleolus (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0019843 - rRNA binding (molecular function) GO:0070037 - rRNA (pseudouridine) methyltransferase activity (molecular function)
InterPro domains	IPR005304 - Ribosomal biogenesis, methyltransferase, EMG1/NEP1 IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal IPR029028 - Alpha/beta knot methyltransferases

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7017643.1 Ribosomal RNA small subunit methyltransferase NEP1, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-142

89.54

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKK ERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        DKWNVG
Subjt:  DKWNVG

XP_008443268.1 PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Cucumis melo]

5.6e-129

81.37

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKKAE+YDRD+DGEES++ AKK MVENEPDE+P     +E+FHELEGIPIVPKDPK+D+ AGVIF+LERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSN+LRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVK+R YLDAV+DDVDLVFVVGAMAHGKIET YTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        +KWNVG
Subjt:  DKWNVG

XP_022935622.1 ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita moschata]

1.2e-142

89.87

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        DKWNVG
Subjt:  DKWNVG

XP_022983847.1 ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita maxima]

1.7e-141

89.22

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Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKK ERYDRDDDGEES ASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        DKWNVG
Subjt:  DKWNVG

XP_023527836.1 ribosomal RNA small subunit methyltransferase nep-1 [Cucurbita pepo subsp. pepo]

1.7e-141

89.22

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Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKK ERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEE FHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        DKWNVG
Subjt:  DKWNVG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFI3 Uncharacterized protein

7.9e-129

81.05

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKK+E+YDRD+D EEST+ +KK M+ENEPDE+P    A+E+FHELEGIPI PKDPK+DS AGVIF+LERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSN+LRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVKVR YLDAV+DDVDLVFVVGAMAHGKIET YTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        +KWNVG
Subjt:  DKWNVG

A0A1S3B7L0 ribosomal RNA small subunit methyltransferase NEP1

2.7e-129

81.37

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKKAE+YDRD+DGEES++ AKK MVENEPDE+P     +E+FHELEGIPIVPKDPK+D+ AGVIF+LERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSN+LRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVK+R YLDAV+DDVDLVFVVGAMAHGKIET YTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        +KWNVG
Subjt:  DKWNVG

A0A5D3DPQ6 Ribosomal RNA small subunit methyltransferase NEP1

2.7e-129

81.37

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKKAE+YDRD+DGEES++ AKK MVENEPDE+P     +E+FHELEGIPIVPKDPK+D+ AGVIF+LERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSN+LRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLP+N RKMGFSHSSDKLVK+R YLDAV+DDVDLVFVVGAMAHGKIET YTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        +KWNVG
Subjt:  DKWNVG

A0A6J1F634 ribosomal RNA small subunit methyltransferase nep-1

5.6e-143

89.87

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        DKWNVG
Subjt:  DKWNVG

A0A6J1J0G6 ribosomal RNA small subunit methyltransferase nep-1

8.1e-142

89.22

Show/hide

Query:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE
        MVRPFAAKGKKRKK ERYDRDDDGEES ASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGK          
Subjt:  MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTE

Query:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL
                         NYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY   +QLL
Subjt:  LFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFY---VQLL

Query:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
        QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA
Subjt:  QKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLA

Query:  DKWNVG
        DKWNVG
Subjt:  DKWNVG

SwissProt top hits

e value

%identity

Alignment

O35130 Ribosomal RNA small subunit methyltransferase NEP1

1.6e-38

41.42

Show/hide

Query:  SKAG---VIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKV
        SK G   +I VLE ASLE  KVGK                            Y+LLN D H + L +N R+PG+ RPDI HQ+LL + DS + +AG L+ 
Subjt:  SKAG---VIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKV

Query:  VYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA
        VY+ T+K +LIE+ P  R+PRT  RF    VQLL KLS+ AA   +KL +VIKNPV+ + P    K+G S S + +  +R   + V     +VFVVGA A
Subjt:  VYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMA

Query:  HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV
        HGK+   YT+ +++IS YPLSA+   A +     + W V
Subjt:  HGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV

Q06287 Ribosomal RNA small subunit methyltransferase NEP1

9.5e-39

45.5

Show/hide

Query:  YQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVI
        Y LLN DDH   L++  R+  + RPDI HQ LL + DS I KAG+L+ VY++T +G+LIE+ P VR+PRT KRF    VQLL KLSI +    EKL +VI
Subjt:  YQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVI

Query:  KNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGK--IETGYTDDLLAISEYPLSASCCIADICKDLADKWNV
        KNP+T +LP+  RK+  S  +  +++V+ Y++ ++DD  +   VGAMA GK      Y D+ + +S YPLSAS   +  C    D WN+
Subjt:  KNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGK--IETGYTDDLLAISEYPLSASCCIADICKDLADKWNV

Q10107 Ribosomal RNA small subunit methyltransferase mra1

8.0e-38

43.04

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Query:  VIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEK
        +I VL++A LE+ KVGK                          + YQLLN DDH   L++ NRN    RPDI HQ LL + DS + KAGRL+ VY+ T K
Subjt:  VIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEK

Query:  GLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHG--KIE
         +LIE+ P VR+PRT KRF    VQLL KLSI +    EKL +VIKNPVT YLP N RK   S  +   V  R YL+ ++ +  +   +GAMAHG     
Subjt:  GLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHG--KIE

Query:  TGYTDDLLAISEYPLSASCCIADICKDLAD
         G+ D+ ++IS+YPLSAS   +     + D
Subjt:  TGYTDDLLAISEYPLSASCCIADICKDLAD

Q92979 Ribosomal RNA small subunit methyltransferase NEP1

2.1e-38

39.18

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Query:  QPENEAAEENFHELEGIPIVPKDPK--SDSKAG---VIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRN
        +P   +  E   + + +P  PK P+  + +K G   +I VLE ASLE  KVGK                            Y+LLN D H + L +N R+
Subjt:  QPENEAAEENFHELEGIPIVPKDPK--SDSKAG---VIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRN

Query:  PGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSH
        PG+ RPDI HQ+LL + DS + +AG L+ VY+ T+K +LIE+ P  R+PRT  RF    VQLL KLS+ AA   +KL +VIKNPV+ + P    K+G S 
Subjt:  PGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSH

Query:  SSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV
        S   +  VR   + V     +VFVVGA AHGK+   YT+ +++IS YPLSA+   A +     + W V
Subjt:  SSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV

Q9XX15 Ribosomal RNA small subunit methyltransferase nep-1

1.0e-37

40.25

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Query:  DPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRL
        D + + K  +  VLE  SLE AKVG                             Y +L+SD H+NFLR+  ++P DYRPDILHQ LL + DS + +AG+L
Subjt:  DPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRL

Query:  KVVYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGA
        + V+ +T K +L+++ P  R+PRT  RF    VQLL KLSI AA   +KL  V+KNPV+ +LP  SRKM  S +  +L  +   L A E D  LV ++G 
Subjt:  KVVYVKTEKGLLIEIKPYVRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGA

Query:  MAHGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV
        +A GKI   Y D    IS YPLSA+   A +   L + W +
Subjt:  MAHGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNV

Arabidopsis top hits

e value

%identity

Alignment

AT3G57000.1 nucleolar essential protein-related

4.9e-75

50.77

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Query:  MVRPFAAKGKKRK-KAERYDRDDD-------------GEESTASAKKAMVENEPDEQPENEAAEENFHELE----GIPIVPKDPKSDSKAGVIFVLERAS
        MVRP+  K  KRK + ERYD+++D               ES+  AKK       ++  E E   E     E    GIPIV   P  + K+G++FVLE+AS
Subjt:  MVRPFAAKGKKRK-KAERYDRDDD-------------GEESTASAKKAMVENEPDEQPENEAAEENFHELE----GIPIVPKDPKSDSKAGVIFVLERAS

Query:  LEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPY
        LEVAKVGK                            YQLLNSDDH+NFL++NNRNP DYRPDI HQALL I DS + KAGRLK VYV+TEKG+L E+KP+
Subjt:  LEVAKVGKDLIRLWRLTELFYAFLKFELTIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPY

Query:  VRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQ-YLPSNSRKMGFSHSSDKLVKVRTYLDAV-EDDVDLVFVVGAMAHGKIETGYTDDLLA
        VR+PRT KRF    +QLLQKLSITA   REKL R +KNP+ + +LP NS ++GFSHSS+KLV ++ +L  V +DD D VFVVGAMAHGKI+  Y D+ ++
Subjt:  VRLPRTQKRF---YVQLLQKLSITAAGKREKLFRVIKNPVTQ-YLPSNSRKMGFSHSSDKLVKVRTYLDAV-EDDVDLVFVVGAMAHGKIETGYTDDLLA

Query:  ISEYPLSASCCIADICKDLADKWNV
        +SEYPLSA+ CI+ IC+ LA  WN+
Subjt:  ISEYPLSASCCIADICKDLADKWNV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCGACCGTTTGCGGCGAAAGGGAAGAAGAGAAAGAAGGCGGAAAGATACGACAGAGACGATGATGGCGAAGAATCGACCGCTTCGGCCAAGAAGGCTATGGTGGA
GAACGAACCTGATGAACAACCAGAGAATGAAGCAGCAGAAGAAAACTTCCACGAGCTTGAAGGTATTCCAATCGTTCCGAAAGACCCCAAGAGTGATAGTAAGGCTGGTG
TCATCTTCGTCCTCGAACGAGCTTCTCTGGAGGTCGCCAAAGTTGGGAAGGATTTAATTCGATTATGGCGTTTAACTGAGCTTTTTTATGCGTTTTTGAAGTTTGAACTT
ACTATTTACTTTCCATTCTCTAATTACCAGCTGTTGAATTCCGACGACCACTCCAATTTTTTGCGGAGAAACAATAGAAATCCTGGGGATTACAGACCTGACATCCTGCA
TCAAGCTCTCCTGGCGATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGTTGAAAGTTGTTTATGTGAAAACTGAGAAAGGTTTATTAATTGAAATCAAACCATATGTTC
GTCTTCCAAGGACGCAGAAGCGGTTTTATGTGCAATTGCTACAAAAGTTAAGCATCACAGCTGCGGGCAAGCGTGAGAAGCTTTTCAGGGTGATAAAAAACCCTGTAACA
CAGTATTTACCTTCCAATTCTCGTAAAATGGGCTTCTCGCATAGTTCAGACAAGTTGGTCAAGGTGCGAACTTATCTGGATGCTGTCGAAGATGATGTAGACCTTGTTTT
TGTGGTGGGTGCAATGGCTCATGGGAAAATTGAGACCGGTTACACCGATGATCTTTTAGCAATTTCTGAATATCCTCTCAGTGCTAGTTGCTGTATTGCGGATATTTGCA
AAGATTTGGCAGATAAATGGAATGTAGGGTGA

mRNA sequence

Show/hide mRNA sequence

TTCGGCTACAACCCTCTCTTCGCGCCTACTGTTAAGCGAGTTCGAGCTCAAAGAAGAACAATGGTTCGACCGTTTGCGGCGAAAGGGAAGAAGAGAAAGAAGGCGGAAAG
ATACGACAGAGACGATGATGGCGAAGAATCGACCGCTTCGGCCAAGAAGGCTATGGTGGAGAACGAACCTGATGAACAACCAGAGAATGAAGCAGCAGAAGAAAACTTCC
ACGAGCTTGAAGGTATTCCAATCGTTCCGAAAGACCCCAAGAGTGATAGTAAGGCTGGTGTCATCTTCGTCCTCGAACGAGCTTCTCTGGAGGTCGCCAAAGTTGGGAAG
GATTTAATTCGATTATGGCGTTTAACTGAGCTTTTTTATGCGTTTTTGAAGTTTGAACTTACTATTTACTTTCCATTCTCTAATTACCAGCTGTTGAATTCCGACGACCA
CTCCAATTTTTTGCGGAGAAACAATAGAAATCCTGGGGATTACAGACCTGACATCCTGCATCAAGCTCTCCTGGCGATTTTCGATAGCCGCATTGCAAAGGCTGGGAGGT
TGAAAGTTGTTTATGTGAAAACTGAGAAAGGTTTATTAATTGAAATCAAACCATATGTTCGTCTTCCAAGGACGCAGAAGCGGTTTTATGTGCAATTGCTACAAAAGTTA
AGCATCACAGCTGCGGGCAAGCGTGAGAAGCTTTTCAGGGTGATAAAAAACCCTGTAACACAGTATTTACCTTCCAATTCTCGTAAAATGGGCTTCTCGCATAGTTCAGA
CAAGTTGGTCAAGGTGCGAACTTATCTGGATGCTGTCGAAGATGATGTAGACCTTGTTTTTGTGGTGGGTGCAATGGCTCATGGGAAAATTGAGACCGGTTACACCGATG
ATCTTTTAGCAATTTCTGAATATCCTCTCAGTGCTAGTTGCTGTATTGCGGATATTTGCAAAGATTTGGCAGATAAATGGAATGTAGGGTGAACCGTACCTACGACTCTG
CATCAGTTAAGTTTGATAATCAGTGTCTCAACTCTGTTGTTTCATATTTATTAAGTTATTATTTCAGAGAATCTGCCTGCACAGATGTCTTAGGCGTTTATTTTTTCCTG
CTTAAAAAATGAGCTGTAGAACGAATTAAACCTTACCATAGCTATTTCTGTGTAGCGAATTCTTAGTCGATTATGTTACAAATGCATCTTCTTCTAAATATAATTGTAAG
CAGTTGATTTCTAGTTCTTAAAAGTTCGATCAGAAGTTATTGTACTGGAATTTTATTGCATAGCGTTTGAGTTCTTTGGTGTGCGTTAGAATATCAATTGTGAAA

Protein sequence

Show/hide protein sequence

MVRPFAAKGKKRKKAERYDRDDDGEESTASAKKAMVENEPDEQPENEAAEENFHELEGIPIVPKDPKSDSKAGVIFVLERASLEVAKVGKDLIRLWRLTELFYAFLKFEL
TIYFPFSNYQLLNSDDHSNFLRRNNRNPGDYRPDILHQALLAIFDSRIAKAGRLKVVYVKTEKGLLIEIKPYVRLPRTQKRFYVQLLQKLSITAAGKREKLFRVIKNPVT
QYLPSNSRKMGFSHSSDKLVKVRTYLDAVEDDVDLVFVVGAMAHGKIETGYTDDLLAISEYPLSASCCIADICKDLADKWNVG

CmoCh14G005180 (gene) of Cucurbita moschata (Rifu) v1 genome