CuGenDBv2

Gene ID	CmoCh14G007360
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Cytochrome b6
Genome location	Cmo_Chr14:3766124..3767677
RNA-Seq Expression	CmoCh14G007360
Synteny	CmoCh14G007360
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0022904 - respiratory electron transport chain (biological process) GO:0050821 - protein stabilization (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0070469 - respirasome (cellular component) GO:0042301 - phosphate ion binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR005797 - Cytochrome b/b6, N-terminal IPR016174 - Di-haem cytochrome, transmembrane IPR023530 - Cytochrome b6, PetB IPR027387 - Cytochrome b/b6-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

APW82662.1 cytochrome b6 [Citrullus lanatus subsp. vulgaris]

6.4e-10

76.36

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMILYPSEKQTNPILFK
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI     KQ   +L++
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMILYPSEKQTNPILFK

KAG8387965.1 hypothetical protein BUALT_Bualt02G0076000 [Buddleja alternifolia]

3.8e-10

97.56

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        LELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

YP_009156905.1 cytochrome b6 [Hordeum jubatum]

8.4e-10

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

YP_009252621.1 cytochrome b6 [Iochroma lehmannii]

8.4e-10

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

YP_009458241.1 PetB [Dendrosenecio battiscombei]

8.4e-10

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

TrEMBL top hits

e value

%identity

Alignment

A0A075ECE2 Cytochrome b6

4.1e-10

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

A0A193D4A0 Cytochrome b6

4.1e-10

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

A0A1P8LDT3 Cytochrome b6

3.1e-10

76.36

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMILYPSEKQTNPILFK
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI     KQ   +L++
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMILYPSEKQTNPILFK

A0A346QBD9 Cytochrome b6

4.1e-10

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

A0A3S8DL82 Cytochrome b6

4.1e-10

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

SwissProt top hits

e value

%identity

Alignment

A0A365 Cytochrome b6

1.1e-12

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

A1EA38 Cytochrome b6

1.1e-12

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

Q70XX8 Cytochrome b6

1.1e-12

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

Q7YJU8 Cytochrome b6

1.1e-12

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

Q8S8W0 Cytochrome b6

1.1e-12

95.12

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00720.1 photosynthetic electron transfer B

1.1e-12

92.68

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Query:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI
        +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHF MI
Subjt:  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI

Sequences

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CDS sequence

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ATGAGTAATAAAGGAACAAGTTTTGGGTTCGTCATCGGGATGAAGATTATATTTACTGCCCTTTCCTTAATGCTGTCAAGCTTTAACGATTGGCAAATTAAAGAGCTAGA
GTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTATCACTTCTTACTGCCGTATTTATGTTAATGCACTTCC
CAATGATACTTTATCCAAGTGAGAAACAAACAAACCCCATTTTGTTTAAGGTAATAACAAGGAACAACAAAACATCCCTCACAGTTTCAGCAATCTTATTGCGCCATATT
GAAGTAGAGCAACAAGAAGACTCACCTGTATCATCCCCGACAGACCCACAATCCATTTCTTCCCATCAAAGGAACGGGGAGCTTCGGCCAATGTCGGGAAAATCACCATC
GCCATGGCCAAAAGGAGAGGTAGAAATGGCCCAACAATGGCCCTTGCTGTCTTTGAATAAATGA

mRNA sequence

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Protein sequence

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MSNKGTSFGFVIGMKIIFTALSLMLSSFNDWQIKELELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMILYPSEKQTNPILFKVITRNNKTSLTVSAILLRHI
EVEQQEDSPVSSPTDPQSISSHQRNGELRPMSGKSPSPWPKGEVEMAQQWPLLSLNK

CmoCh14G007360 (gene) of Cucurbita moschata (Rifu) v1 genome