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CmoCh14G008660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G008660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCmo_Chr14:4577565..4577996
RNA-Seq ExpressionCmoCh14G008660
SyntenyCmoCh14G008660
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060761.1 formin-like protein 3 [Cucumis melo var. makuwa]2.2e-4369.39Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPN-CKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG
        M  SAAI LS SFL L L LA SQ   P  +DPQ+P++EIKCGSCPCSNPC++Q  PPPP PPPP+ C P +   PPPPRFIYT  SP PPPPRF YTTG
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPN-CKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG

Query:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        VPGNLY+IDANN WYYFSGTT  +P  AA+VVALGCGAL+LM F KW
Subjt:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

KAG6581215.1 hypothetical protein SDJN03_21217, partial [Cucurbita argyrosperma subsp. sororia]6.6e-7297.9Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
        MAPSAAIPLSLSFLFLFLHLADSQPV PVD QDPNSEIKCGSCPCSNPCVKQFPPPPP PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN

Query:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
Subjt:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

KAG7017949.1 hypothetical protein SDJN02_19815, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-7197.2Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
        MAPSAAIPLSLSFLFLFLHLADSQPV PVDPQDPNSEIKCGSCPCSNPCVKQFPPP   PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN

Query:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
Subjt:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

XP_022984145.1 probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]1.4e-6996.5Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
        MAPSAAIPLSLSFLFLFLHLA+SQPV PVDPQDPNSEIKCGSCPCSNPCVKQFPPPPP PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN

Query:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        LYQIDANNRWYYFSGTTRN  ATAALVVALGCGALNLMAFGKW
Subjt:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

XP_023528316.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]3.3e-7195.8Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
        MAPSAAIPLSLSFLFLFLHLADSQP  PVDPQDPNSEIKCGSCPCSNPCVKQFPPPPP PPPPNCKPALPPPPPPPRFIYT+LSPPPPPRFIYTTGVPGN
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN

Query:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        LYQIDANNRWYYFSGTTRN+PATA LVVALGCGALNLMAFGKW
Subjt:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

TrEMBL top hitse value%identityAlignment
A0A0A0L7R0 Uncharacterized protein5.3e-4367.33Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQF----PPPPPLPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIY
        MAP AAI LS SFL   L LA+SQ   P  VDPQ+P++EIKCGSCPCSNPC++Q     PPPPP PPP  C P +   PPPPRFIYT+ SP PPPPRF Y
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQF----PPPPPLPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIY

Query:  TTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        TTGVPGNLY+IDANN WYYFSGT R +P  AA+ VA+GCGAL+LM F KW
Subjt:  TTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

A0A2N9I535 Uncharacterized protein8.2e-2054.39Show/hide
Query:  DPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPP-----PPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATA
        D ++ N+E+KCG+CPC NPC +Q PPPPP PPPP   P  PPPPP     P    +T  +PPPPPRFIY TGVPGNLY  D  N W Y+SG  RN    +
Subjt:  DPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPP-----PPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATA

Query:  ALVVALGCGALNLM
         L+V  GCG L L+
Subjt:  ALVVALGCGALNLM

A0A5A7V4T2 Formin-like protein 31.1e-4369.39Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPN-CKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG
        M  SAAI LS SFL L L LA SQ   P  +DPQ+P++EIKCGSCPCSNPC++Q  PPPP PPPP+ C P +   PPPPRFIYT  SP PPPPRF YTTG
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPN-CKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG

Query:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        VPGNLY+IDANN WYYFSGTT  +P  AA+VVALGCGAL+LM F KW
Subjt:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

A0A6J1GAW3 leucine-rich repeat extensin-like protein 24.8e-2857.53Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCP-CSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPP-RFIYTTGVP
        MAPSAAI     FL L L    + P +   P DP++EI C S   CSNP V+Q  P PPLP         PPP PPPRF YT+LS PPPP RFIYTTGVP
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCP-CSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPP-RFIYTTGVP

Query:  GNLYQIDANNRWYYFSGTTRNQPATAAL-VVALGCGALNLMAFGKW
         +LYQ D  NRWYYFSG     PA AAL VV L CGAL+L+ FGKW
Subjt:  GNLYQIDANNRWYYFSGTTRNQPATAAL-VVALGCGALNLMAFGKW

A0A6J1J7W0 probable pathogenesis-related protein ARB_028616.7e-7096.5Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
        MAPSAAIPLSLSFLFLFLHLA+SQPV PVDPQDPNSEIKCGSCPCSNPCVKQFPPPPP PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN

Query:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        LYQIDANNRWYYFSGTTRN  ATAALVVALGCGALNLMAFGKW
Subjt:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein1.5e-0534.82Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPP-PPPPRFIYTSLS------PPPPPRFIY
        M+P       L+   L   +  + P++ ++ +D ++E+         PC++  PPPPP PPPP+C P+ PPP PPPP+      S      PPPPP +++
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPP-PPPPRFIYTSLS------PPPPPRFIY

Query:  TTGVPGNLYQID
        T   PG+LY I+
Subjt:  TTGVPGNLYQID

AT1G23040.1 hydroxyproline-rich glycoprotein family protein7.2e-0851.56Show/hide
Query:  CSNPCVKQFP---PPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQID
        CS  C++  P   PPPP PPPP C P    PPPPP+ + +   PPPP  F+Y TG PGNLY +D
Subjt:  CSNPCVKQFP---PPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQID

AT1G70990.1 proline-rich family protein2.5e-0549.33Show/hide
Query:  QDPNSEIKCGSCPCSNPCVKQFPPP-PPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQID
        +DP   IKC       PC++  PPP PP P PP    A PPPP PP     S  PPPP  +IY TG PG LY ID
Subjt:  QDPNSEIKCGSCPCSNPCVKQFPPP-PPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQID

AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein7.2e-0841.18Show/hide
Query:  LPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALN
        L PPPP   +   S S PPPP+++Y TGVPG LY+ + +++W Y S   RN      ++V +G G +N
Subjt:  LPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALN

AT3G22800.1 Leucine-rich repeat (LRR) family protein2.8e-0448.53Show/hide
Query:  IKCGSCPCSNPC-VKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPP--PPRFIYTTGVPGNLY
        I C S  CS P      PPPPP PPPP   P  PPPPPPP ++Y S  PPP  PP ++Y    P  +Y
Subjt:  IKCGSCPCSNPC-VKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPP--PPRFIYTTGVPGNLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTTGCCGGTCGATCCGCAAGATCCCAATTCCGA
AATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCACTGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCAC
CGCCCCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGG
TATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTTGCCGGTCGATCCGCAAGATCCCAATTCCGA
AATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCACTGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCAC
CGCCCCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGG
TATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA
Protein sequenceShow/hide protein sequence
MAPSAAIPLSLSFLFLFLHLADSQPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRW
YYFSGTTRNQPATAALVVALGCGALNLMAFGKW