; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh14G009490 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G009490
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionneuronal acetylcholine receptor subunit alpha-2-like
Genome locationCmo_Chr14:5058628..5059098
RNA-Seq ExpressionCmoCh14G009490
SyntenyCmoCh14G009490
Gene Ontology termsNA
InterPro domainsIPR008480 - Protein of unknown function DUF761, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581289.1 hypothetical protein SDJN03_21291, partial [Cucurbita argyrosperma subsp. sororia]2.5e-6199.15Show/hide
Query:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK
        MSCTKWDAARRAMKFLRHWKIHTHRRYR SFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK
Subjt:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK

Query:  AEKFIKMFYEEMRLQSQ
        AEKFIKMFYEEMRLQSQ
Subjt:  AEKFIKMFYEEMRLQSQ

XP_011652950.1 uncharacterized protein LOC105435158 [Cucumis sativus]4.5e-2651.35Show/hide
Query:  TKWDAARRAMK-FLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS---------------------
        T++   R+A K  LR WK+H+H   RR+FPVDFR + RFIKR++HPTPTPL P+ AERQFSFND PI HLK H R  PS                     
Subjt:  TKWDAARRAMK-FLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS---------------------

Query:  --PPCDY----------EAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQ
            C++          E EEEEEE+GID KAEKFIKMFYEEM++QSQ
Subjt:  --PPCDY----------EAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQ

XP_022934217.1 uncharacterized protein LOC111441455 [Cucurbita moschata]6.7e-62100Show/hide
Query:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK
        MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK
Subjt:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK

Query:  AEKFIKMFYEEMRLQSQ
        AEKFIKMFYEEMRLQSQ
Subjt:  AEKFIKMFYEEMRLQSQ

XP_023526161.1 uncharacterized protein LOC111789721 [Cucurbita pepo subsp. pepo]3.4e-5896.58Show/hide
Query:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK
        MSCTKWDAARRAMKFLR WKIHTHRR RRSFPVDF HVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHR PPPSPPCDYEAEEEEEEEGIDSK
Subjt:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK

Query:  AEKFIKMFYEEMRLQSQ
        AEKFIKMFYEEMRLQSQ
Subjt:  AEKFIKMFYEEMRLQSQ

XP_038906165.1 uncharacterized protein LOC120092045 [Benincasa hispida]1.5e-2448.8Show/hide
Query:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIH----PTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSP--------------
        MS TK  AARR  K LR  K HTH   RR FPVDFR + RFIKRL+H    PTP P+ P+  ERQFSFND PI HLK HR PP +               
Subjt:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIH----PTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSP--------------

Query:  ---------------------------PCDYEAEEEEEEE----GIDSKAEKFIKMFYEEMRLQSQ
                                    C YE EEEEEEE    GID KAEKFIKMFYEEM++QSQ
Subjt:  ---------------------------PCDYEAEEEEEEE----GIDSKAEKFIKMFYEEMRLQSQ

TrEMBL top hitse value%identityAlignment
A0A0A0KYA9 Uncharacterized protein2.2e-2651.35Show/hide
Query:  TKWDAARRAMK-FLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS---------------------
        T++   R+A K  LR WK+H+H   RR+FPVDFR + RFIKR++HPTPTPL P+ AERQFSFND PI HLK H R  PS                     
Subjt:  TKWDAARRAMK-FLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS---------------------

Query:  --PPCDY----------EAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQ
            C++          E EEEEEE+GID KAEKFIKMFYEEM++QSQ
Subjt:  --PPCDY----------EAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQ

A0A1S3BZI3 neuronal acetylcholine receptor subunit alpha-2-like4.4e-1950Show/hide
Query:  WKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS-----------------------PPCDYEAEEEEEEE
        WKI      RR+FPVDFR + RFIKR++H TPTPL  + AERQFSFND PI     HRRPP +                         C++E EEEEEEE
Subjt:  WKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS-----------------------PPCDYEAEEEEEEE

Query:  ----------GIDSKAEKFIKMFYEEMRLQSQ
                  GID KAEKFIKMFYEEM++QSQ
Subjt:  ----------GIDSKAEKFIKMFYEEMRLQSQ

A0A5D2IN63 Uncharacterized protein4.3e-0633.54Show/hide
Query:  AARRAMKFLRHWKIHTHRR--YRRSFPVDFRHVWRFIKRLIHPTPTPL-RPYSAERQFSFNDNPIVHLKLHR-------RPPPSP---------------
        AA+RA + LR + + T +    RR   ++ R V +F+K L H +P+P  + Y  ERQ SF++ PI H+K+HR        P  SP               
Subjt:  AARRAMKFLRHWKIHTHRR--YRRSFPVDFRHVWRFIKRLIHPTPTPL-RPYSAERQFSFNDNPIVHLKLHR-------RPPPSP---------------

Query:  ------------PCDYEAEEEE--------------EEEGIDSKAEKFIKMFYEEMRLQSQ
                     C+ + EE+               EEEGIDSKA+KFI  FYE+M+LQ Q
Subjt:  ------------PCDYEAEEEE--------------EEEGIDSKAEKFIKMFYEEMRLQSQ

A0A5D3E0E5 Neuronal acetylcholine receptor subunit alpha-2-like4.4e-1950Show/hide
Query:  WKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS-----------------------PPCDYEAEEEEEEE
        WKI      RR+FPVDFR + RFIKR++H TPTPL  + AERQFSFND PI     HRRPP +                         C++E EEEEEEE
Subjt:  WKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS-----------------------PPCDYEAEEEEEEE

Query:  ----------GIDSKAEKFIKMFYEEMRLQSQ
                  GID KAEKFIKMFYEEM++QSQ
Subjt:  ----------GIDSKAEKFIKMFYEEMRLQSQ

A0A6J1F231 uncharacterized protein LOC1114414553.2e-62100Show/hide
Query:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK
        MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK
Subjt:  MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSK

Query:  AEKFIKMFYEEMRLQSQ
        AEKFIKMFYEEMRLQSQ
Subjt:  AEKFIKMFYEEMRLQSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02170.1 unknown protein4.0e-0430Show/hide
Query:  WRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS-----------PPCDYEAEEE--------------------EEEEGIDSKAEKFIKM
        ++ +K L H      R Y  ERQ SF++ P+ ++K     P S           PP D++ + E                    EEE+G+D +AE+FI  
Subjt:  WRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPS-----------PPCDYEAEEE--------------------EEEEGIDSKAEKFIKM

Query:  FYEEMRLQSQ
        FYE+++LQ Q
Subjt:  FYEEMRLQSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTGCACTAAATGGGATGCTGCTCGCAGAGCAATGAAATTCCTACGCCACTGGAAAATTCACACCCACCGCCGCTACCGTCGCTCCTTTCCGGTGGATTTCCGTCA
CGTGTGGCGGTTCATCAAGCGACTCATTCACCCAACCCCAACGCCTCTCCGCCCATATTCTGCAGAGCGTCAATTCTCCTTCAATGACAACCCCATTGTTCACCTGAAAT
TGCATCGCCGTCCGCCGCCGTCGCCGCCGTGTGATTATGAAGCGGAGGAGGAAGAGGAAGAAGAAGGGATTGATTCGAAGGCGGAGAAGTTTATTAAAATGTTTTACGAG
GAAATGAGGTTGCAGAGTCAGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCTGCACTAAATGGGATGCTGCTCGCAGAGCAATGAAATTCCTACGCCACTGGAAAATTCACACCCACCGCCGCTACCGTCGCTCCTTTCCGGTGGATTTCCGTCA
CGTGTGGCGGTTCATCAAGCGACTCATTCACCCAACCCCAACGCCTCTCCGCCCATATTCTGCAGAGCGTCAATTCTCCTTCAATGACAACCCCATTGTTCACCTGAAAT
TGCATCGCCGTCCGCCGCCGTCGCCGCCGTGTGATTATGAAGCGGAGGAGGAAGAGGAAGAAGAAGGGATTGATTCGAAGGCGGAGAAGTTTATTAAAATGTTTTACGAG
GAAATGAGGTTGCAGAGTCAGTTTTAA
Protein sequenceShow/hide protein sequence
MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAERQFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSKAEKFIKMFYE
EMRLQSQF