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CmoCh14G009630 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G009630
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionflowering time control protein FCA
Genome locationCmo_Chr14:5139937..5141511
RNA-Seq ExpressionCmoCh14G009630
SyntenyCmoCh14G009630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038123.1 flowering time control protein FCA [Cucumis melo var. makuwa]6.1e-3257.59Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK
        MQNQ  CQQP QDSH QQNLQ     PP+ RGVQT S          +  V  T+                   +T   +W+KPEEFALFE+QLKQEKL+
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK

Query:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        K NHQ+H SL G+SS EV PQPNL SQKL+ Q SSAVRELDCMRLQSKASPVV PACV
Subjt:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

KAG6581307.1 hypothetical protein SDJN03_21309, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4277.69Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSAAQTVSNTIITVSPMWKKPEEFALFEQQLKQEKLKKSNHQLHCSLAGLSSTEVLPQPNLLSQK
        MQNQE CQQ WQDSH  + +++               AAQTVSNTIITVSPMWKKPEEFALFEQQLKQEKLK SNHQLH SLAGLSSTEVLPQPN+LS+K
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSAAQTVSNTIITVSPMWKKPEEFALFEQQLKQEKLKKSNHQLHCSLAGLSSTEVLPQPNLLSQK

Query:  LEVQSSSAVRELDCMRLQSKASPVVIPACV
        LEVQSSSAVRELDCMRLQSK SPVVIPACV
Subjt:  LEVQSSSAVRELDCMRLQSKASPVVIPACV

XP_008447475.2 PREDICTED: flowering time control protein FCA [Cucumis melo]6.1e-3257.59Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK
        MQNQ  CQQP QDSH QQNLQ     PP+ RGVQT S          +  V  T+                   +T   +W+KPEEFALFE+QLKQEKL+
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK

Query:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        K NHQ+H SL G+SS EV PQPNL SQKL+ Q SSAVRELDCMRLQSKASPVV PACV
Subjt:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

XP_031738780.1 flowering time control protein FCA isoform X1 [Cucumis sativus]1.9e-3360.76Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK
        MQNQ   QQP QDSH QQNLQ     PPSARGVQT S          +  V  T+                   +T   +W+KPEEFALFEQQLK+EKL+
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK

Query:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        K NHQLH SL+G+SS EVLPQPNLLSQKLE Q SSAVRELDCMRLQSKASPVV PACV
Subjt:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

XP_038905034.1 flowering time control protein FCA-like [Benincasa hispida]6.7e-3961.9Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK
        MQNQ  CQQPWQDSH QQNL+VHENTPP+ARGVQT S             V  T+                   +T   +W+KPEEFALFEQQLKQEKLK
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK

Query:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVR----------ELDCMRLQSKASPVVIPACV
        KSNHQLH SLAGLSS EV PQPNL SQKLEVQ SSAVR          ELDCMRLQSK SPVV PACV
Subjt:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVR----------ELDCMRLQSKASPVVIPACV

TrEMBL top hitse value%identityAlignment
A0A0A0LBT6 Uncharacterized protein9.1e-3460.76Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK
        MQNQ   QQP QDSH QQNLQ     PPSARGVQT S          +  V  T+                   +T   +W+KPEEFALFEQQLK+EKL+
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK

Query:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        K NHQLH SL+G+SS EVLPQPNLLSQKLE Q SSAVRELDCMRLQSKASPVV PACV
Subjt:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

A0A1S3BIF0 flowering time control protein FCA2.9e-3257.59Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK
        MQNQ  CQQP QDSH QQNLQ     PP+ RGVQT S          +  V  T+                   +T   +W+KPEEFALFE+QLKQEKL+
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK

Query:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        K NHQ+H SL G+SS EV PQPNL SQKL+ Q SSAVRELDCMRLQSKASPVV PACV
Subjt:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

A0A5A7T550 Flowering time control protein FCA2.9e-3257.59Show/hide
Query:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK
        MQNQ  CQQP QDSH QQNLQ     PP+ RGVQT S          +  V  T+                   +T   +W+KPEEFALFE+QLKQEKL+
Subjt:  MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSA---------AQTVSNTI-------------------ITVSPMWKKPEEFALFEQQLKQEKLK

Query:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        K NHQ+H SL G+SS EV PQPNL SQKL+ Q SSAVRELDCMRLQSKASPVV PACV
Subjt:  KSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

A0A6J1DSB0 CUGBP Elav-like family member 45.0e-3257.86Show/hide
Query:  MQNQERC-QQPWQDSHLQQNLQVHENTPPSARGVQTSSAAQT----------------------------VSNTIITVSPMWKKPEEFALFEQQLKQEKL
        MQNQ  C QQP +DS+ QQN QV+ENTPP+A G+QT S                                     +T    W+KPEEFALFEQQLKQEKL
Subjt:  MQNQERC-QQPWQDSHLQQNLQVHENTPPSARGVQTSSAAQT----------------------------VSNTIITVSPMWKKPEEFALFEQQLKQEKL

Query:  KKSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        +K NHQLH SL  +SS EVLP PN+ SQKLEVQSSSAVRELDCMRLQSKASPVV PACV
Subjt:  KKSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

A0A6J1GA62 flowering time control protein FCA4.4e-2050.31Show/hide
Query:  MQNQERCQQPWQDSH-LQQNLQVHENTPPSARGVQTSSAAQTVSNT----------------------------IITVSPMWKKPEEFALFEQQLKQEKL
        M NQ   QQP QDSH  QQNLQ      P AR VQT +       T                             +T   +W+KPEEFA FEQQ KQEKL
Subjt:  MQNQERCQQPWQDSH-LQQNLQVHENTPPSARGVQTSSAAQTVSNT----------------------------IITVSPMWKKPEEFALFEQQLKQEKL

Query:  KKSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV
        +K NH      AGLSS E LPQPNL   K  VQ+S+AVRELDCMRLQSKASPVV PACV
Subjt:  KKSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVRELDCMRLQSKASPVVIPACV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAATCAGGAGCGTTGTCAACAGCCCTGGCAAGATTCACATCTGCAGCAGAATTTACAGGTTCATGAGAATACGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAG
TGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTATGTGGAAGAAACCAGAGGAGTTTGCCTTGTTTGAGCAACAATTGAAGCAGGAAAAGCTTAAAAAAT
CGAACCATCAGCTTCATTGTTCATTAGCAGGCCTCTCATCAACCGAAGTGCTGCCTCAGCCAAATCTCTTGAGTCAAAAACTTGAAGTCCAATCTTCCTCAGCTGTACGA
GAGTTGGATTGTATGCGACTTCAATCCAAAGCAAGTCCTGTTGTTATTCCAGCCTGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAATCAGGAGCGTTGTCAACAGCCCTGGCAAGATTCACATCTGCAGCAGAATTTACAGGTTCATGAGAATACGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAG
TGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTATGTGGAAGAAACCAGAGGAGTTTGCCTTGTTTGAGCAACAATTGAAGCAGGAAAAGCTTAAAAAAT
CGAACCATCAGCTTCATTGTTCATTAGCAGGCCTCTCATCAACCGAAGTGCTGCCTCAGCCAAATCTCTTGAGTCAAAAACTTGAAGTCCAATCTTCCTCAGCTGTACGA
GAGTTGGATTGTATGCGACTTCAATCCAAAGCAAGTCCTGTTGTTATTCCAGCCTGTGTTTAACAATGTTGTCTAAGTTATTAGGAAGGTTATTTAAGACAGTTCATCAT
GTTGGCAACTAACATTGATCCTTTAATGTCTAGTCATTACAATGTGAATTAGAATGGTAACGAAGACTACATGTTAGCTGCTCAACACGCAACTTAGACGTTTGGATTGC
TCATGTAAAGCTGGTGTTGCATGTAGTCTATCAACTATTTGTCCTGCAAACTCTTGGGGTAGTATATGGACCATCAAGAAATGCTTTATTCTCCTCTCCAACCGACGTGG
GATCTCACATGTGCGAGATTAAAGGACATTGTACATTTAGTGTACGTGAGATATACGTCGAACTTCTATTGATATAGTTGAGAGTATCCATTTGTAATCCGTTAAGCTCT
ATATTTCAGGTCAACTTGATCTGTATATATCTTTTTATTAAGACGTTTTCAAATTGGTTAATCATAGTTTAGTGGTCTGCAGGTGCCTACAACAGTAGACAGACAATTGG
GTACGGAGGTTGGTTCCCATCAACTGTTATGGAGTAATTTGTAATAAGTATTTAATTCCTGAT
Protein sequenceShow/hide protein sequence
MQNQERCQQPWQDSHLQQNLQVHENTPPSARGVQTSSAAQTVSNTIITVSPMWKKPEEFALFEQQLKQEKLKKSNHQLHCSLAGLSSTEVLPQPNLLSQKLEVQSSSAVR
ELDCMRLQSKASPVVIPACV