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CmoCh14G009640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G009640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionflowering time control protein FCA-like isoform X6
Genome locationCmo_Chr14:5141875..5144991
RNA-Seq ExpressionCmoCh14G009640
SyntenyCmoCh14G009640
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022983976.1 sex-lethal homolog isoform X1 [Cucurbita maxima]2.2e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

XP_022983978.1 protein sex-lethal-like isoform X2 [Cucurbita maxima]2.2e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

XP_022983980.1 CUGBP Elav-like family member 4 isoform X3 [Cucurbita maxima]2.2e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

XP_022983981.1 protein sex-lethal-like isoform X4 [Cucurbita maxima]2.2e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

XP_022983983.1 flowering time control protein FCA-like isoform X6 [Cucurbita maxima]2.2e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

TrEMBL top hitse value%identityAlignment
A0A6J1J0U4 sex-lethal homolog isoform X11.1e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

A0A6J1J3W9 protein sex-lethal-like isoform X41.1e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

A0A6J1J7F0 CUGBP Elav-like family member 4 isoform X31.1e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

A0A6J1J988 protein sex-lethal-like isoform X21.1e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

A0A6J1J993 flowering time control protein FCA-like isoform X61.1e-2283.58Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
        +K + +  ++TGQQKGSCFVKYAT VEADRA SALDNQYTFPGELTPMNVKYADSERDRLEATTFQA
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQA

SwissProt top hitse value%identityAlignment
B8BCZ8 Flowering time control protein FCA2.8e-1261.11Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDR
        I  R TG+Q+G CFVKYAT  EA+RA  AL NQYT PG + P+ V+YAD ER+R
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDR

O04425 Flowering time control protein FCA1.8e-1154.1Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ
        I  + TGQQ+G CFVKYAT  +ADRA  AL NQ T PG   P+ V+YAD ER+R+    F+
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ

Q6DGV1 CUGBP Elav-like family member 43.3e-0540.68Show/hide
Query:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDR
        ++   IL    G  KG  FVKY+T  EA  A SAL    T PG  + + VK+AD++++R
Subjt:  LKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDR

Q6K271 Flowering time control protein FCA2.8e-1261.11Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDR
        I  R TG+Q+G CFVKYAT  EA+RA  AL NQYT PG + P+ V+YAD ER+R
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDR

Q8GZ26 RNA-binding protein BRN21.1e-0538.33Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTF
        I  ++T   +G CF+   T  +AD+  ++  N+ T PG  +P+ VKYAD E +RLE   F
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTF

Arabidopsis top hitse value%identityAlignment
AT1G03457.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.0e-0738.33Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTF
        I  ++T   +G CF+   T  +AD+  ++  N+ T PG  +P+ VKYAD E +RLE   F
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTF

AT2G47310.1 flowering time control protein-related / FCA gamma-related5.0e-0942.31Show/hide
Query:  RSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRL
        + TG++   CF+KY  + E + A +AL  Q+TFPGE+ P+ V++A++ER+R+
Subjt:  RSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRL

AT4G16280.2 RNA binding;abscisic acid binding1.3e-1254.1Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ
        I  + TGQQ+G CFVKYAT  +ADRA  AL NQ T PG   P+ V+YAD ER+R+    F+
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ

AT4G16280.3 RNA binding;abscisic acid binding1.3e-1254.1Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ
        I  + TGQQ+G CFVKYAT  +ADRA  AL NQ T PG   P+ V+YAD ER+R+    F+
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ

AT4G16280.4 RNA binding;abscisic acid binding1.3e-1254.1Show/hide
Query:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ
        I  + TGQQ+G CFVKYAT  +ADRA  AL NQ T PG   P+ V+YAD ER+R+    F+
Subjt:  ILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCCAAGTTCCCCGAACGGGAACCGAAGAAGCTATTCGTTCTTTGTTTGAAGTCCATGGAGATATTGTCAAGATCAACTGGTCAACAGAAAGGTAGTTGCTTTGT
GAAATACGCTACCTTGGTTGAAGCAGACAGGGCAACCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGAACTGACACCTATGAATGTGAAATATGCTGATAGTGAAA
GAGACCGCCTTGAGGCAACAACATTTCAGGCAGAGTGA
mRNA sequenceShow/hide mRNA sequence
GTATTTTCCAGATGATCTTATGCGGAAACCCGCACCGAAGTTTTCGTGGTCATCTCTCTGTCATCTCCCATCGTTTGTCTTCGTCTTCCACGTTCAATCGCCTCATCATT
TTCAGGCCTCGACTAAATTTTCTGGAGAGCCACCGCCCCGCACCGTCATGGCCCTCCGACGACCACTGCCCCAATTTCAACCACCAGTTTGATCCTTATGTTCAATACCC
CAATCACCATCCCGGACCCCCTTTTGGCCAGCCTAATTATCCCCCAAACGACAATGAATAAATGGGTGTTCAGCCAGCAGTTCCAGAAGGAAAAGGAGAATGCATAAGGA
GTTTCGTCTGGCTTTCTTTCCTTTTATTCTAGAACAGTAAAGGAAAAGGAGGTTCAGGTAATGGTGTTTTAGAGCCCCACCCTACCACGCACGAGAGTTAAGGGGAGAGG
GATAAGAGAAGTCGGGTTCAGTCCAGAAATTCGAGTACTCGCACCATCCGCCACCACCGCCGCAGCAACAGCCTCCGTTCCAGCACCCGCCACCGCACCAACAGCCGTAT
CAGCACCAGCAGAATAACTGGAACCATCCAGAGTTCCACAATCATCCCCCGGATTATCGTCCCCAGCCGCACTTTAACGGCGAGATGAGTGAGAGGTTTGGATACGGCGG
TTTGAGGGCGAATTGTGGGGATCAGAATGCAAATTTGGGGCGTAAAAGGCCCAGAATCCATTCCGACAGAACGGTTCCTGCAGATCATGCTGAGGCTAGTGGCCTCGTGA
AATTGTATGTTGCCCAAGTTCCCCGAACGGGAACCGAAGAAGCTATTCGTTCTTTGTTTGAAGTCCATGGAGATATTGTCAAGATCAACTGGTCAACAGAAAGGTAGTTG
CTTTGTGAAATACGCTACCTTGGTTGAAGCAGACAGGGCAACCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGAACTGACACCTATGAATGTGAAATATGCTGATA
GTGAAAGAGACCGCCTTGAGGCAACAACATTTCAGGCAGAGTGA
Protein sequenceShow/hide protein sequence
MLPKFPEREPKKLFVLCLKSMEILSRSTGQQKGSCFVKYATLVEADRATSALDNQYTFPGELTPMNVKYADSERDRLEATTFQAE