CuGenDBv2

Gene ID	CmoCh14G009960
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L44
Genome location	Cmo_Chr14:5371242..5373725
RNA-Seq Expression	CmoCh14G009960
Synteny	CmoCh14G009960
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR000552 - Ribosomal protein L44e IPR011332 - Zinc-binding ribosomal protein

Homology

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GenBank top hits

e value

%identity

Alignment

AAK94425.1 60S ribosomal protein L144, partial [Brassica rapa subsp. pekinensis]

1.4e-26

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Query:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        RR  RF   +   K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

CAF2159116.1 unnamed protein product, partial [Brassica napus]

4.0e-26

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Query:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        RR  RF       K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

CAG7901426.1 unnamed protein product, partial [Brassica rapa]

1.4e-26

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Query:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        RR  RF   +   K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

KAG5378517.1 hypothetical protein IGI04_026359 [Brassica rapa subsp. trilocularis]

1.4e-26

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Query:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        RR  RF   +   K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

KAG7014271.1 60S ribosomal protein L44 [Cucurbita argyrosperma subsp. argyrosperma]

4.0e-26

96.88

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Query:  NGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        + KQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  NGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

TrEMBL top hits

e value

%identity

Alignment

A0A218XDP5 Uncharacterized protein

3.3e-26

95.31

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Query:  NGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        NG QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLA QGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  NGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

A0A3P6B6W2 Uncharacterized protein

6.7e-27

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Query:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        RR  RF   +   K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

A0A4D9A0S7 Large subunit ribosomal protein L44e

6.7e-27

81.58

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Query:  SRRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        ++  + F +  C   +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  SRRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

F6HF50 Uncharacterized protein

1.9e-26

93.85

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Query:  CNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        C+  QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  CNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

Q94ER6 60S ribosomal protein L144 (Fragment)

6.7e-27

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Query:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        RR  RF   +   K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

SwissProt top hits

e value

%identity

Alignment

A8PCG3 60S ribosomal protein L44

7.9e-25

64.77

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPS------GIECSKNYFNNQIQAKSIK
        VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK  +       +EC+   +  Q+  K  K
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPS------GIECSKNYFNNQIQAKSIK

O23290 60S ribosomal protein L36a

1.1e-26

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

O59870 60S ribosomal protein L44

6.0e-25

67.05

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPS------GIECSKNYFNNQIQAKSIK
        VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK  +       +ECS   +  Q+  K  K
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPS------GIECSKNYFNNQIQAKSIK

Q96499 60S ribosomal protein L44

2.2e-27

98.33

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

Q9UWE4 60S ribosomal protein L44

7.9e-25

64.77

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPS------GIECSKNYFNNQIQAKSIK
        VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK  +       +EC+   +  Q+  K  K
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPS------GIECSKNYFNNQIQAKSIK

Arabidopsis top hits

e value

%identity

Alignment

AT3G23390.1 Zinc-binding ribosomal protein family protein

7.8e-28

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

AT4G14320.1 Zinc-binding ribosomal protein family protein

7.8e-28

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

AT4G14320.2 Zinc-binding ribosomal protein family protein

7.8e-28

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Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK

Sequences

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CDS sequence

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ATGGCTCTCGTTTCGCCTTCGCGTCGTAAGTTAAGATTCGATTATGGATATTGTAATGGGAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGA
GTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGATACGATCGCAAACAATCAGGATATGGAGGTC
AGACCAAGCCTGTGTTTCACAAGAAGTTACCATCTGGGATTGAATGCTCTAAGAATTACTTCAACAATCAAATTCAAGCCAAGTCGATAAAGGATTGA

mRNA sequence

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Protein sequence

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MALVSPSRRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPSGIECSKNYFNNQIQAKSIKD

CmoCh14G009960 (gene) of Cucurbita moschata (Rifu) v1 genome