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CmoCh14G010010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G010010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationCmo_Chr14:5392754..5395508
RNA-Seq ExpressionCmoCh14G010010
SyntenyCmoCh14G010010
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581557.1 hypothetical protein SDJN03_21559, partial [Cucurbita argyrosperma subsp. sororia]2.0e-8899.39Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
        MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK

Query:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
        DQSQACEFESKWKEICRKMCH+RKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Subjt:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS

KAG7018060.1 slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-8899.39Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
        MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK

Query:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
        DQSQACEFESKWKEICRKMCH+RKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Subjt:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]8.8e-89100Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
        MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK

Query:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
        DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Subjt:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS

XP_022982643.1 structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima]2.9e-8496.3Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
        MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTL +KSEPE KKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK

Query:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
        +QSQACEFESKWKEICRKM HMRKEEVDD TLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
Subjt:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP

XP_023528241.1 structure-specific endonuclease subunit slx1 [Cucurbita pepo subsp. pepo]2.7e-8598.16Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSS-STKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGF
        MRLLSQTFRSQKLPISS EVSKSSSS STKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGF
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSS-STKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGF

Query:  KDQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
        KDQSQACEFESKWKEICRKMCHMRKEEVDD TLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
Subjt:  KDQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein4.2e-6879.29Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEP--KKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+P  K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEP--KKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHG

Query:  FKDQSQACEFESKWKEICRKMCHMRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
        FKDQSQACEFESKWK++ RK+ + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Subjt:  FKDQSQACEFESKWKEICRKMCHMRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP

A0A1S3CFH5 structure-specific endonuclease subunit slx11.6e-6778.57Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGF

Query:  KDQSQACEFESKWKEICRKMCHMRKE-----EVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
        KDQSQACEFESKWK++ RK+ + +KE     ++D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Subjt:  KDQSQACEFESKWKEICRKMCHMRKE-----EVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP

A0A6J1DGL6 structure-specific endonuclease subunit SLX12.3e-5871.18Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIH
        MRLLS TFR  K PIS+P+   SSSSSTK P   TL  +S+ +PK WCVYLIISSN P KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIH

Query:  GFKDQSQACEFESKWKEICRKMCHMRK-----EEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
        GFKDQSQACEFESKWKE+ RK+ H RK     E+ D+  LRLLK RQRAL KVK +FDC++FEFD +LDP
Subjt:  GFKDQSQACEFESKWKEICRKMCHMRK-----EEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP

A0A6J1F1V2 structure-specific endonuclease subunit slx14.3e-89100Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
        MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK

Query:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
        DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS
Subjt:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X11.4e-8496.3Show/hide
Query:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
        MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTL +KSEPE KKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK
Subjt:  MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFK

Query:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
        +QSQACEFESKWKEICRKM HMRKEEVDD TLRLLKQRQRALGKVKGLFDCTQFEFDWELDP
Subjt:  DQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP

SwissProt top hitse value%identityAlignment
B6JY16 Structure-specific endonuclease subunit slx14.8e-1338.39Show/hide
Query:  WCVYLIISSNPPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRAL
        +C YL++S     ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +  A +FE  W+       H +    DD     L+Q  R +
Subjt:  WCVYLIISSNPPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRAL

Query:  G-KVKGLFDCTQ
          K + L  C +
Subjt:  G-KVKGLFDCTQ

B6QFH5 Structure-specific endonuclease subunit slx12.2e-1037.14Show/hide
Query:  PTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACKIHGFKDQSQACEFESKWKEICRKMCHMRKEEVD
        P  +   +P P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     I GF  ++ A +FE  W+ +     H+   E D
Subjt:  PTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACKIHGFKDQSQACEFESKWKEICRKMCHMRKEEVD

Query:  DVTLR
         +  R
Subjt:  DVTLR

B8MDD1 Structure-specific endonuclease subunit slx15.9e-1139.56Show/hide
Query:  STKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACKIHGFKDQSQACEFESKWKEI
        +T V    V ++P P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     + GF  ++ A +FE  W+ +
Subjt:  STKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACKIHGFKDQSQACEFESKWKEI

Q4D7L5 Structure-specific endonuclease subunit SLX1 homolog 11.1e-0945.83Show/hide
Query:  CVYLIISSNPPI--KTYVGVTLDFDRRLKQHNGEIKGGA-KATRAGRPWICACKIHGFKDQSQACEFESKWK
        CVYL+ S +P    + Y+G T+D  RRL+QHNGEI  GA +  R GRPW   C + GF +   A +FE  W+
Subjt:  CVYLIISSNPPI--KTYVGVTLDFDRRLKQHNGEIKGGA-KATRAGRPWICACKIHGFKDQSQACEFESKWK

Q9P7M3 Structure-specific endonuclease subunit slx19.1e-1243.24Show/hide
Query:  WCVYLIISSNPPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEI
        +C YL+ S+        Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF ++  A +FE  W+ +
Subjt:  WCVYLIISSNPPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEI

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.5e-0943.48Show/hide
Query:  YLIISSNPPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWK
        YL+ S +P  K  TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Subjt:  YLIISSNPPIK--TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWK

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal8.9e-3950.6Show/hide
Query:  RLLSQTFRSQKLPISSPEVS-----KSSSSSTKVPTLIVKSE----PEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC
        RLLS+TF S KL  S+P+       K+S +   +P+     E    P+ K W VYLI+S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSQTFRSQKLPISSPEVS-----KSSSSSTKVPTLIVKSE----PEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC

Query:  ACKIHGFKDQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWEL
        AC I GF   SQA  FESKWK   RK+   +K+E    +  LL+ R+RAL KV+   DC+  E DW++
Subjt:  ACKIHGFKDQSQACEFESKWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCTGCTCTCTCAGACATTTCGTAGCCAAAAACTCCCAATTTCAAGCCCAGAAGTTTCGAAATCTTCTTCTTCATCAACTAAGGTTCCAACATTGATCGTCAAATC
AGAGCCGGAGCCGAAGAAATGGTGCGTTTATCTCATCATCTCCTCCAATCCCCCCATCAAAACCTATGTAGGAGTCACCCTCGACTTTGATCGACGTTTAAAACAACATA
ATGGTGAAATAAAAGGTGGTGCAAAGGCAACTCGAGCGGGGCGACCCTGGATTTGTGCGTGCAAAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCA
AAATGGAAAGAAATTTGCAGGAAAATGTGCCATATGAGAAAGGAAGAAGTAGATGATGTGACATTAAGGTTGCTGAAGCAAAGGCAGAGAGCTCTGGGAAAAGTGAAAGG
TCTGTTTGATTGCACTCAATTTGAGTTTGATTGGGAACTCGATCCCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATCAAATTAAATCCGAGGGCAAAAAACGGTCAACCAAATGTGCAGGTTCGAACCCGCGCCGATGAACGAAGACTATGAGGCTGCTCTCTCAGACATTTCGTAGCCAAAAA
CTCCCAATTTCAAGCCCAGAAGTTTCGAAATCTTCTTCTTCATCAACTAAGGTTCCAACATTGATCGTCAAATCAGAGCCGGAGCCGAAGAAATGGTGCGTTTATCTCAT
CATCTCCTCCAATCCCCCCATCAAAACCTATGTAGGAGTCACCCTCGACTTTGATCGACGTTTAAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAGGCAACTCGAG
CGGGGCGACCCTGGATTTGTGCGTGCAAAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAGAAATTTGCAGGAAAATGTGCCATATG
AGAAAGGAAGAAGTAGATGATGTGACATTAAGGTTGCTGAAGCAAAGGCAGAGAGCTCTGGGAAAAGTGAAAGGTCTGTTTGATTGCACTCAATTTGAGTTTGATTGGGA
ACTCGATCCCTCCTGATTCTTTTACAATATTTATCAATTTATTACCAAAAGTTGTTTATTAGATAAAATGCTAAATTAATTAAAATCTCC
Protein sequenceShow/hide protein sequence
MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEPKKWCVYLIISSNPPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFES
KWKEICRKMCHMRKEEVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPS