CuGenDBv2

Gene ID	CmoCh14G010080
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein
Genome location	Cmo_Chr14:5443154..5443743
RNA-Seq Expression	CmoCh14G010080
Synteny	CmoCh14G010080
Gene Ontology terms	GO:0000470 - maturation of LSU-rRNA (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR016095 - Ribosomal protein L1, 3-layer alpha/beta-sandwich IPR023674 - Ribosomal protein L1-like IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_015881825.1 50S ribosomal protein L1, chloroplastic isoform X1 [Ziziphus jujuba]

8.8e-39

89.77

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTV PN+PQA+AEFKQGKVEYRA KTGIVHLPFGK DFS EDLL+NLLAA+KS+ETNKPSGAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

XP_022152718.1 LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia]

8.8e-39

93.18

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS+EDLLINLLAAIKSVETNKPSGAKGVYWKS HICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

XP_022998464.1 50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]

8.8e-39

92.05

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS+EDLL+NLLAAIKSVETNKP+GAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

XP_023525415.1 50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]

8.8e-39

92.05

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS+EDLL+NLLAAIKSVETNKP+GAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

XP_038905945.1 50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]

3.9e-39

93.18

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS+EDLLINLLAAIKS+ETNKPSGAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DFM3 Ribosomal protein

4.2e-39

93.18

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS+EDLLINLLAAIKSVETNKPSGAKGVYWKS HICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

A0A6J1G9U2 Ribosomal protein

4.2e-39

92.05

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS+EDLL+NLLAAIKSVETNKP+GAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

A0A6J1KEE5 Ribosomal protein

4.2e-39

92.05

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS+EDLL+NLLAAIKSVETNKP+GAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

A0A6P3ZQJ2 Ribosomal protein

4.2e-39

89.77

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTV PN+PQA+AEFKQGKVEYRA KTGIVHLPFGK DFS EDLL+NLLAA+KS+ETNKPSGAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

A0A6P4A7P3 Ribosomal protein

4.2e-39

89.77

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTV PN+PQA+AEFKQGKVEYRA KTGIVHLPFGK DFS EDLL+NLLAA+KS+ETNKPSGAKGVYWKSAHICSSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

SwissProt top hits

e value

%identity

Alignment

A6MVP8 50S ribosomal protein L1, chloroplastic

8.0e-27

62.5

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MP+PK+GTV  ++ +A+ EFK+GK+EYRA K+GIVH+ FGK DFS EDLL NL A  +S++ N+PSG KG YWKS +ICS+MGPSI+L
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

O78413 50S ribosomal protein L1, chloroplastic

8.8e-26

59.09

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MP+PK+GTV  ++  A+ EFK+GK+EYRA K+GIVH+ FGK +FS  DLL+NL A  +S++ N+P+G KG YWKS +ICS+MGPSI+L
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

Q8DM27 50S ribosomal protein L1

5.2e-26

60.23

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MP+PKAGTV  +LPQA+ EFK GKVE+RA ++GIVH+ FGK  FS EDLL+NL A  +S++ N+PSGAKG YW+S ++ ++MGPSI++
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

Q9LE95 50S ribosomal protein L1, chloroplastic

1.4e-34

78.41

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MP PKAGTV PN+ QA+ EFK+GKVE+R  KTGIVH+PFGK +F +EDLLINL A IKSVETNKP+GAKGVYWKSAHI SSMGPSIRL
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

Q9LY66 50S ribosomal protein L1, chloroplastic

2.9e-37

80.68

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTV  N+PQA+ EFK+GKVE+RA KTGIVH+PFGK +F++EDLLIN LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+L
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

Arabidopsis top hits

e value

%identity

Alignment

AT2G42710.1 Ribosomal protein L1p/L10e family

9.7e-12

38.64

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGV-----YWKSAHICSSMG
        MPNPK G+V  ++ +A+ + K G  ++R  KT I+H+P GK  FS+E L  N+ A + ++   KP+G K       Y  + H+CS+MG
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGV-----YWKSAHICSSMG

AT3G63490.1 Ribosomal protein L1p/L10e family

2.1e-38

80.68

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Query:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL
        MPNPKAGTV  N+PQA+ EFK+GKVE+RA KTGIVH+PFGK +F++EDLLIN LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+L
Subjt:  MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRL

Sequences

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CDS sequence

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ATGCCGAATCCGAAAGCCGGTACTGTAGCACCCAATTTGCCTCAGGCATTAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCATATAAAACTGGTATAGTTCACTT
ACCATTTGGAAAACCTGACTTCAGCAAAGAGGACCTTCTTATAAACTTGCTGGCTGCCATAAAATCAGTAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGA
AGAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGCCTCTTGGGGGATCCATTGGAAGATAATGGTGCCCATATGTGA

mRNA sequence

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Protein sequence

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MPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFSKEDLLINLLAAIKSVETNKPSGAKGVYWKSAHICSSMGPSIRLLGDPLEDNGAHM

CmoCh14G010080 (gene) of Cucurbita moschata (Rifu) v1 genome