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CmoCh14G010140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G010140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 11-like
Genome locationCmo_Chr14:5495817..5498251
RNA-Seq ExpressionCmoCh14G010140
SyntenyCmoCh14G010140
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0001055 - RNA polymerase II activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR036603 - RNA polymerase, RBP11-like subunit
IPR037685 - RNA polymerase RBP11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI31897.1 hypothetical protein CRG98_047707 [Punica granatum]1.4e-5094.39Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IERE+HTIGNILRMQLHRDENVLFAGYKLPHPL+YKII+RIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEV
        L+NA EV
Subjt:  LKNALEV

XP_008461807.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]2.4e-5095.28Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKNA E
Subjt:  LKNALE

XP_011004185.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Populus euphratica]1.8e-5093.46Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF +ERE+HTIGNILRMQLHRD+NVLFAGYKLPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEV
        LKNA EV
Subjt:  LKNALEV

XP_022152550.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia]6.3e-5197.17Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKNA E
Subjt:  LKNALE

XP_022935017.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita moschata]1.9e-52100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKNALE
Subjt:  LKNALE

TrEMBL top hitse value%identityAlignment
A0A0A0LCD5 RNA_pol_L_2 domain-containing protein1.2e-5095.28Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKNA E
Subjt:  LKNALE

A0A2I0HJK0 RNA_pol_L_2 domain-containing protein6.8e-5194.39Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IERE+HTIGNILRMQLHRDENVLFAGYKLPHPL+YKII+RIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEV
        L+NA EV
Subjt:  LKNALEV

A0A6J1DE90 DNA-directed RNA polymerases II, IV and V subunit 113.0e-5197.17Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKNA E
Subjt:  LKNALE

A0A6J1F4E5 DNA-directed RNA polymerases II, IV and V subunit 11-like9.4e-53100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKNALE
Subjt:  LKNALE

A0A6J1IWY4 DNA-directed RNA polymerases II, IV and V subunit 11-like9.4e-53100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKNALE
Subjt:  LKNALE

SwissProt top hitse value%identityAlignment
P52435 DNA-directed RNA polymerase II subunit RPB11-a3.6e-2550.47Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEV
        L+    V
Subjt:  LKNALEV

Q32P79 DNA-directed RNA polymerase II subunit RPB113.6e-2550.47Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEV
        L+    V
Subjt:  LKNALEV

Q38859 DNA-directed RNA polymerases II, IV and V subunit 112.5e-5088.68Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKN  E
Subjt:  LKNALE

Q86JJ5 DNA-directed RNA polymerase II subunit rpb119.5e-2649.04Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDR+E FV+P+G KKV+  RDTKI NA+ F I +E+HTIGN++RMQL  D++++FAGY++PHPL++ + IRI T + ++P++   +++  L +E   
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNA
        L+N+
Subjt:  LKNA

Q9VJE4 DNA-directed RNA polymerase II subunit RPB116.1e-2555.1Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKEL
        MNAP  +E F++ EG KK+  E DTK+ NAA F I +E+HT+GN++R QL +D NVLFAGYK+PHPL++K +IRI T +  SP +A+  AI DL  EL
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKEL

Arabidopsis top hitse value%identityAlignment
AT3G52090.1 DNA-directed RNA polymerase, RBP11-like1.8e-5188.68Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALE
        LKN  E
Subjt:  LKNALE

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like1.0e-4669.12Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIR--------------------------
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPLKYKII+R                          
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIR--------------------------

Query:  ----IHTASQSSPMQAYNQAINDLDKELDHLKNALE
            IHT SQSSPMQAYNQAINDLDKELD+LKN  E
Subjt:  ----IHTASQSSPMQAYNQAINDLDKELDHLKNALE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCCCCGACCGATATGAGCGTTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAG
GGAGGAACATACAATTGGAAACATCTTGCGAATGCAGCTTCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCC
GGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
AAAACCCTGAGTTTCTTTCGTTCTTCTCCATCTTCCTCTCTCAGGCAGCTTCCATTACTGCAAAAACCACACCTCCAACAGCTTCCGAAGGAGTCCTAAAGCCATGAATG
CCCCCGACCGATATGAGCGTTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAGGGAGGAA
CATACAATTGGAAACATCTTGCGAATGCAGCTTCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCCGGATCCA
TACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGTTTGA
Protein sequenceShow/hide protein sequence
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEV