CuGenDBv2

Gene ID	CmoCh14G010270
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	arabinogalactan peptide 23-like
Genome location	Cmo_Chr14:5592999..5593184
RNA-Seq Expression	CmoCh14G010270
Synteny	CmoCh14G010270
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044702 - Arabinogalactan protein 23/40

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7018086.1 hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-18

100

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Query:  MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
Subjt:  MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-17

90.16

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA AGLPAIGS+IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]

2.1e-19

98.36

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGS IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

XP_022998512.1 arabinogalactan peptide 23-like [Cucurbita maxima]

1.7e-16

86.89

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGS+IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

XP_038905644.1 arabinogalactan protein 23-like [Benincasa hispida]

8.0e-19

96.72

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MEMKKIACAVLFAAATVSA VAHDEALAPAPGPSSGAA GLPAIGSVIGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9U8 Uncharacterized protein

1.5e-15

86.67

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL
        MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS++GASLLS AAYYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL

A0A5A7U280 Arabinogalactan peptide 23

6.9e-16

86.67

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL
        MEMKKIACA+LFAAATVSA VA D+ALAPAPGPSSGAA GLPAIGS++GASLLS AAYYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL

A0A6J1HQG2 arabinogalactan peptide 23-like

2.2e-14

81.97

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MEMKKI CAVLFAAATV+A VA +EA APAPGP+S A  GLPAIGS+IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

A0A6J1J6Y9 arabinogalactan peptide 23-like

1.0e-19

98.36

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGS IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

A0A6J1K873 arabinogalactan peptide 23-like

8.1e-17

86.89

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
        MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGS+IGASLLSVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

SwissProt top hits

e value

%identity

Alignment

Q8S2W4 Arabinogalactan protein 23

1.5e-12

66.67

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL
        MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL

Arabidopsis top hits

e value

%identity

Alignment

AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)

1.5e-10

63.93

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAAAGLPAIGSVIGASLLSVAAYYL
        MEMKKIAC V+FAAA+++AV+A  E  APAPGP +SGA+  +PA+GS++GASL+S+ AYYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAAAGLPAIGSVIGASLLSVAAYYL

AT3G57690.1 arabinogalactan protein 23

1.1e-13

66.67

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Query:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL
        MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL

Sequences

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CDS sequence

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ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGC
CGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

mRNA sequence

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ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGC
CGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Protein sequence

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MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

CmoCh14G010270 (gene) of Cucurbita moschata (Rifu) v1 genome