; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh14G010400 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh14G010400
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L6
Genome locationCmo_Chr14:5692363..5694569
RNA-Seq ExpressionCmoCh14G010400
SyntenyCmoCh14G010400
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000915 - 60S ribosomal protein L6E
IPR005568 - Ribosomal protein L6, N-terminal
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149609.1 60S ribosomal protein L6-2 [Cucumis sativus]2.3e-5896.67Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPPKFYPADDVKKP+VNKRKAKPTKLRSSITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

XP_008461779.1 PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo]3.9e-5896.67Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPPKFYPADDVKKPLVNKRKAKPTKLR+SITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

XP_022935449.1 60S ribosomal protein L6-1-like [Cucurbita moschata]4.2e-60100Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

XP_022983464.1 60S ribosomal protein L6-1-like [Cucurbita maxima]4.2e-60100Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

XP_023528566.1 60S ribosomal protein L6-1-like [Cucurbita pepo subsp. pepo]4.6e-5998.33Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPK AR SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

TrEMBL top hitse value%identityAlignment
A0A0A0L9J7 60S ribosomal protein L61.1e-5896.67Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPPKFYPADDVKKP+VNKRKAKPTKLRSSITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

A0A1S3CFY6 60S ribosomal protein L61.9e-5896.67Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPPKFYPADDVKKPLVNKRKAKPTKLR+SITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

A0A5D3CKB9 60S ribosomal protein L61.9e-5896.67Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+PK +APAEKPPKFYPADDVKKPLVNKRKAKPTKLR+SITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

A0A6J1F5G0 60S ribosomal protein L62.0e-60100Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

A0A6J1J7G9 60S ribosomal protein L62.0e-60100Show/hide
Query:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
        MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF
Subjt:  MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRF

Query:  KGKRVVFLKQLPSGLLLVTG
        KGKRVVFLKQLPSGLLLVTG
Subjt:  KGKRVVFLKQLPSGLLLVTG

SwissProt top hitse value%identityAlignment
P34091 60S ribosomal protein L61.7e-4883.19Show/hide
Query:  VSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVF
        VSRNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  +       EKPPKFYPADDVKKPL+NKRK KPTKLR+SITPGTVLIIL GRFKGKRVVF
Subjt:  VSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVF

Query:  LKQLPSGLLLVTG
        LKQL SGLLLVTG
Subjt:  LKQLPSGLLLVTG

Q6QMZ4 60S ribosomal protein L63.4e-2047.76Show/hide
Query:  SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKP-----------------PKFYPADDVKKPLVNKRKAKP-----TKLRSS
        SRNP L+RG+G+YSRS MY ++ L+  K            + K  A   KP                 P++YP +DV + L++  K KP      KLR+S
Subjt:  SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKP-----------------PKFYPADDVKKPLVNKRKAKP-----TKLRSS

Query:  ITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG
        ITPGTVLIILTGR +GKRVVFLKQL SGLLLVTG
Subjt:  ITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTG

Q9C9C5 60S ribosomal protein L6-31.5e-5286.32Show/hide
Query:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK
        +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DAP EKPPKFYPA+DVKKPL N+R AKPTKLR+SITPGTVLIIL GRFKGK
Subjt:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK

Query:  RVVFLKQLPSGLLLVTG
        RVVFLKQL SGLLLVTG
Subjt:  RVVFLKQLPSGLLLVTG

Q9C9C6 60S ribosomal protein L6-21.5e-5286.32Show/hide
Query:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK
        +TA+V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DAP EKPPKFYPA+DVKKPL N+R AKP KLR+SITPGTVLIIL GRFKGK
Subjt:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK

Query:  RVVFLKQLPSGLLLVTG
        RVVFLKQL SGLLLVTG
Subjt:  RVVFLKQLPSGLLLVTG

Q9FZ76 60S ribosomal protein L6-17.9e-5486.55Show/hide
Query:  APKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFK
        A +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAQPK DAP EKP KFYPA+DVKKPLVN+RK KPTKL++SITPGTVLIIL GRFK
Subjt:  APKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFK

Query:  GKRVVFLKQLPSGLLLVTG
        GKRVVFLKQL SGLLLVTG
Subjt:  GKRVVFLKQLPSGLLLVTG

Arabidopsis top hitse value%identityAlignment
AT1G18540.1 Ribosomal protein L6 family protein5.6e-5586.55Show/hide
Query:  APKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFK
        A +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAQPK DAP EKP KFYPA+DVKKPLVN+RK KPTKL++SITPGTVLIIL GRFK
Subjt:  APKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFK

Query:  GKRVVFLKQLPSGLLLVTG
        GKRVVFLKQL SGLLLVTG
Subjt:  GKRVVFLKQLPSGLLLVTG

AT1G74050.1 Ribosomal protein L6 family protein1.1e-5386.32Show/hide
Query:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK
        +T +V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DAP EKPPKFYPA+DVKKPL N+R AKPTKLR+SITPGTVLIIL GRFKGK
Subjt:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK

Query:  RVVFLKQLPSGLLLVTG
        RVVFLKQL SGLLLVTG
Subjt:  RVVFLKQLPSGLLLVTG

AT1G74060.1 Ribosomal protein L6 family protein1.1e-5386.32Show/hide
Query:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK
        +TA+V+RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DAP EKPPKFYPA+DVKKPL N+R AKP KLR+SITPGTVLIIL GRFKGK
Subjt:  KTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGK

Query:  RVVFLKQLPSGLLLVTG
        RVVFLKQL SGLLLVTG
Subjt:  RVVFLKQLPSGLLLVTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGAAGACAGCACGAGTTAGCAGAAACCCCGATCTCATTCGAGGGGTTGGTAAATATTCGAGGTCGAAGATGTACCACAAGCGAGGTCTTTGGGCAATCAAGGC
CAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCCAGCCTAAGACCGACGCACCAGCTGAGAAGCCGCCGAAATTTTACCCTGCTGACGATGTCAAGAAACCACTTGTCA
ACAAGCGCAAGGCTAAGCCCACCAAACTTAGGTCTAGCATTACACCTGGAACCGTGCTTATCATTCTTACTGGAAGGTTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAA
CTTCCATCTGGGTTGCTCTTAGTCACTGGTGAGGCTTGGCGGGAGAAAGATGCATATAAAATAGTGATTAGCCAATGA
mRNA sequenceShow/hide mRNA sequence
GAATGCCTGAAGCGTTTCGGCGAGTAGGAGGAGAGGAGACGACGCTGCTGCCGCCGAACTCTCAGAAATTCATCAATGGCTCCGAAGACAGCACGAGTTAGCAGAAACCC
CGATCTCATTCGAGGGGTTGGTAAATATTCGAGGTCGAAGATGTACCACAAGCGAGGTCTTTGGGCAATCAAGGCCAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCC
AGCCTAAGACCGACGCACCAGCTGAGAAGCCGCCGAAATTTTACCCTGCTGACGATGTCAAGAAACCACTTGTCAACAAGCGCAAGGCTAAGCCCACCAAACTTAGGTCT
AGCATTACACCTGGAACCGTGCTTATCATTCTTACTGGAAGGTTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTCTTAGTCACTGGTGAGGC
TTGGCGGGAGAAAGATGCATATAAAATAGTGATTAGCCAATGACCATTCAAGGTCAATGGTGTTCCATTGAGGCGTGTGAATCAGTCATACGTGATCGCGACCTCCACCA
AGGTGGACCTTGCAGGAGTCAATGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAGAAGAAGAAAAAGAAGGGAGAAGGAGAGTTTTTCGAGGCAGAGAAG
GAGGAAAAAAGCGCACTCCCACAGGACAAAAAGGATGATCAGAAGGCCGTGGACTCAGCTCTGCTAAAGTCCATTGAGGCAGTTTCAGATTTAAAGACCTACTTAGCTGC
AAGGTTTTCTCTAAAGTCTGGCATGAAACCGCATGAGCTTGTTTTCTAGATATTTTCTCCTCGGTGCCAATACTTTTCTTGTTGACTTGATTCCAACAATCTTCTTGTTC
ATGTTTTGTTATGAGGATTCTAGATTTGAAATTATGTCTCGCAATGAATTTTGCAGTGAACTTTATTCATCAAATTTTGCGTCATGTAGCTCCCTTTGACTTCTGATAGT
GATATGGTATGTAATTTTTCTTCAATTGCGATCACTGTCTTCTAGCTGATGAAATACTGAGGGAACTATTTGAAAAGATTTACTGTGAGATCTCACATTGGAAAGAATAA
TGTAACATTCCTCATAAGTGTCTGGAAACCCCTTAGCAGATGCGTTTTATAAAAACCTTGGGGGAAG
Protein sequenceShow/hide protein sequence
MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPPKFYPADDVKKPLVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQ
LPSGLLLVTGEAWREKDAYKIVISQ